RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 SFT2D3Q587I9 215 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 RABGAP1LQ5R372 815 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 SPOCD1Q6ZMY3 1216 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 DPH6Q7L8W6 267 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TRIM74Q86UV6 250 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TRIM73Q86UV7 250 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 CCDC33Q8N5R6 958 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 PIP4K2CQ8TBX8 421 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 GCNAQ96QF7 691 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TMEM165Q9HC07 324 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 RNF19AQ9NV58 838 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TBX20Q9UMR3 447 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 PCDHB11Q9Y5F2 797 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 AK5Q9Y6K8 562 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 KBTBD13C9JR72 458 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TMEM63AO94886 807 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 EIF2AK2P19525 551 aaKnown RBP10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 PEX2P28328 305 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 RXRBP28702 533 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 MSX2P35548 267 aaPredicted RBP10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 CRKP46108 304 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 VCPP55072 806 aaKnown RBP10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 AQP4P55087 323 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 INHBCP55103 352 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 EFHC2Q5JST6 749 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 DENND5BQ6ZUT9 1274 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TDRPQ86YL5 185 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TMPRSS6Q8IU80 811 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 KATNAL2Q8IYT4 538 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 ZNF276Q8N554 614 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 FEZF2Q8TBJ5 459 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 CPT1BQ92523 772 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 VTI1AQ96AJ9 217 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 SRPK1Q96SB4 655 aaKnown RBP10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TUBB6Q9BUF5 446 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 CALN1Q9BXU9 219 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 VPS11Q9H270 941 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 TDRD3Q9H7E2 651 aaKnown RBP10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 MRPL47Q9HD33 250 aaKnown RBP10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 NYAP2Q9P242 653 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 PI4KBQ9UBF8 816 aa10.3□□□□□ -0.76
PTCHD4-202ENST00000398738 H3BRB1 525 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 PSTPIP1O43586 416 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 UGT1A9O60656 530 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 HNRNPCL1O60812 293 aaKnown RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 HLA-DRAP01903 254 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 NPTX2P47972 431 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 TMED1Q13445 227 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 MARK2Q7KZI7 788 aaKnown RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 NUDCD3Q8IVD9 361 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 UNC45BQ8IWX7 931 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 CEP70Q8NHQ1 597 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 AGR3Q8TD06 166 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 SENP7Q9BQF6 1050 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 WDR83Q9BRX9 315 aaKnown RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 PHACTR1Q9C0D0 580 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 TMX4Q9H1E5 349 aaPredicted RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 TUT1Q9H6E5 874 aaKnown RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 UGT1A7Q9HAW7 530 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 UGT1A10Q9HAW8 530 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 UGT1A8Q9HAW9 530 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 SCAF8Q9UPN6 1271 aaKnown RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 PLIN4Q96Q06 1357 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 H0YIN7 160 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 TRPA1O75762 1119 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 P4HBP07237 508 aaKnown RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 CD48P09326 243 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 RPL22P35268 128 aaKnown RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 GRIA2P42262 883 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 CDK7P50613 346 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 GPC3P51654 580 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 WNT7BP56706 349 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 PDE1BQ01064 536 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 MROH9Q5TGP6 573 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 DNAJC24Q6P3W2 148 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 PAOXQ6QHF9 649 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 SCARA5Q6ZMJ2 495 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 MON1BQ7L1V2 547 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 POLNQ7Z5Q5 900 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 RCOR2Q8IZ40 523 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 DCAKDQ8WVC6 231 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 HSPH1Q92598 858 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 FAM81BQ96LP2 452 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 AGBL1Q96MI9 1066 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 SLC6A16Q9GZN6 736 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 ARHGEF4Q9NR80 690 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 KIAA1522Q9P206 1035 aaPredicted RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 UBE4BO95155 1302 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 NHSQ6T4R5 1651 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 PIK3R2O00459 728 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 LYPLA1O75608 230 aaPredicted RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 ADH1BP00325 375 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 WEE2P0C1S8 567 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 QARSP47897 775 aaKnown RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 ZNF200P98182 395 aaPredicted RBP10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 OGDHQ02218 1023 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 SPP2Q13103 211 aa10.29□□□□□ -0.76
PTCHD4-202ENST00000398738 DMP1Q13316 513 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms