RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PSMG1O95456 288 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 IL1BP01584 269 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 PTPRAP18433 802 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 KCNA3P22001 575 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 CPA2P48052 419 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 ROR1Q01973 937 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 KLC1Q07866 573 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 FBXO27Q8NI29 283 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 UCMAQ8WVF2 138 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 SCG3Q8WXD2 468 aaKnown RBP13.24□□□□□ -0.29
SHMT1-205ENST00000395684 SDCBP2Q9H190 292 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 ZNF395Q9H8N7 513 aaPredicted RBP13.24□□□□□ -0.29
SHMT1-205ENST00000395684 PLAC1Q9HBJ0 212 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 NRBP2Q9NSY0 501 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 HMGXB4Q9UGU5 601 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.24□□□□□ -0.29
SHMT1-205ENST00000395684 COPEO14579 308 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 KLF11O14901 512 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 RNF8O76064 485 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 ENDOD1O94919 500 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 UBA1P22314 1058 aaKnown RBP13.24□□□□□ -0.29
SHMT1-205ENST00000395684 STAT5BP51692 787 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 SLC34A1Q06495 639 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 NOMO1Q15155 1222 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 CCDC62Q6P9F0 684 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 CYP4V2Q6ZWL3 525 aaPredicted RBP13.24□□□□□ -0.29
SHMT1-205ENST00000395684 SLC26A11Q86WA9 606 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 PPM1NQ8N819 430 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 FAF2Q96CS3 445 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 CFAP36Q96G28 342 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 RSAD1Q9HA92 442 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 USP29Q9HBJ7 922 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 TTLL3Q9Y4R7 772 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 MED7O43513 233 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 PEX10O60683 326 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 FARP2O94887 1054 aaPredicted RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 PRKCBP05771 671 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 KRT19P08727 400 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 EFNA5P52803 228 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 CDH6P55285 790 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 IRX1P78414 480 aaPredicted RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 MRPS5P82675 430 aaKnown RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 LAMTOR4Q0VGL1 99 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 TMEM154Q6P9G4 183 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 RFX8Q6ZV50 586 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 TREML1Q86YW5 311 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 CTAGE3PQ8IX95 158 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 SLC4A11Q8NBS3 891 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 RNF149Q8NC42 400 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 MCRS1Q96EZ8 462 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 ZNF668Q96K58 619 aaPredicted RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 MMADHCQ9H3L0 296 aaPredicted RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 RAB6BQ9NRW1 208 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 WDR35Q9P2L0 1181 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 AFG3L2Q9Y4W6 797 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 EME2A4GXA9 379 aaPredicted RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 YWHAZP63104 245 aaKnown RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 OCRLQ01968 901 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 BST1Q10588 318 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 FAXCQ5TGI0 409 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 TTC39BQ5VTQ0 682 aaPredicted RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 TRNP1Q6NT89 227 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 C1orf228Q6PIY5 440 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 LRRC74BQ6ZQY2 392 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 TMEM192Q8IY95 271 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 LRRC71Q8N4P6 559 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 CFAP61Q8NHU2 1237 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 ASCC2Q9H1I8 757 aaPredicted RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 PNPLA8Q9NP80 782 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 SMYD2Q9NRG4 433 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 STX18Q9P2W9 335 aaKnown RBP13.23□□□□□ -0.29
SHMT1-205ENST00000395684 SIX4Q9UIU6 781 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 PLLPQ9Y342 182 aa13.23□□□□□ -0.29
SHMT1-205ENST00000395684 CAPN14A8MX76 684 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 CYB561D2O14569 222 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 CHADO15335 359 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 UGT1A9O60656 530 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 SPAG6O75602 509 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 AMPD1P23109 780 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 PGM1P36871 562 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 THOC5Q13769 683 aaKnown RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 LBRQ14739 615 aaKnown RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 SURF1Q15526 300 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 PRAMEF18Q5VWM3 479 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 FAM91A1Q658Y4 838 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 CATSPERGQ6ZRH7 1159 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 SAMD7Q7Z3H4 446 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 CAND1Q86VP6 1230 aaKnown RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 LRRN4Q8WUT4 740 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 BCO2Q9BYV7 579 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 ELOVL4Q9GZR5 314 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 IQCGQ9H095 443 aaKnown RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 SMYD3Q9H7B4 428 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 UGT1A7Q9HAW7 530 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 UGT1A10Q9HAW8 530 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 UGT1A8Q9HAW9 530 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 B2RBV5 119 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms