RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ARL14EPQ8N8R7 260 aaPredicted RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 BPIFB1Q8TDL5 484 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 SLC22A12Q96S37 553 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 CYP2S1Q96SQ9 504 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 LSM14BQ9BX40 385 aaKnown RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 BRD9Q9H8M2 597 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 GMIPQ9P107 970 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 CHORDC1Q9UHD1 332 aaPredicted RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 CCL26Q9Y258 94 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 ABL1P00519 1130 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 UCHL3P15374 230 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 GDI1P31150 447 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 PLA2G4AP47712 749 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 TUBP50607 506 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 MEA1Q16626 185 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 YAF2Q8IY57 180 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 DNASE1L2Q92874 299 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 IRF7Q92985 503 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 LRRC3BQ96PB8 259 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 TRPV5Q9NQA5 729 aa22.9■■□□□ 1.26
CLN3-207ENST00000395653 TLR8Q9NR97 1041 aaKnown RBP22.9■■□□□ 1.26
CLN3-207ENST00000395653 CHADO15335 359 aa22.89■■□□□ 1.25
CLN3-207ENST00000395653 GNA15P30679 374 aa22.89■■□□□ 1.25
CLN3-207ENST00000395653 ARHGAP29Q52LW3 1261 aa22.89■■□□□ 1.25
CLN3-207ENST00000395653 CCDC186Q7Z3E2 898 aa22.89■■□□□ 1.25
CLN3-207ENST00000395653 UBA3Q8TBC4 463 aa22.89■■□□□ 1.25
CLN3-207ENST00000395653 LRFN3Q9BTN0 628 aa22.89■■□□□ 1.25
CLN3-207ENST00000395653 NAA15Q9BXJ9 866 aaKnown RBP22.89■■□□□ 1.25
CLN3-207ENST00000395653 ARHGAP26Q9UNA1 814 aa22.89■■□□□ 1.25
CLN3-207ENST00000395653 FHOD1Q9Y613 1164 aa22.89■■□□□ 1.25
CLN3-207ENST00000395653 M0QYV0 167 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 TULP2O00295 520 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 ZNF263O14978 683 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 CYP26A1O43174 497 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 MED7O43513 233 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 CALCAP01258 141 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 TCF3P15923 654 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 USP8P40818 1118 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 SLC7A9P82251 487 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 HECTD3Q5T447 861 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 HFE2Q6ZVN8 426 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 SLC35F5Q8WV83 523 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 ZNF606Q8WXB4 792 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 KCTD13Q8WZ19 329 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 PBXIP1Q96AQ6 731 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 CBX8Q9HC52 389 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 ARHGEF3Q9NR81 526 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 THG1LQ9NWX6 298 aaKnown RBP22.88■■□□□ 1.25
CLN3-207ENST00000395653 SIK3Q9Y2K2 1263 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 DAAM1Q9Y4D1 1078 aa22.88■■□□□ 1.25
CLN3-207ENST00000395653 MYO16Q9Y6X6 1858 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 FOXN3O00409 490 aaPredicted RBP22.87■■□□□ 1.25
CLN3-207ENST00000395653 PSEN1P49768 467 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 PLCB2Q00722 1185 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 UBXN1Q04323 297 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 USP4Q13107 963 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 RAPGEF1Q13905 1077 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 FAM71AQ8IYT1 594 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 SIX5Q8N196 739 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 SECISBP2LQ93073 1101 aaKnown RBP22.87■■□□□ 1.25
CLN3-207ENST00000395653 RNF38Q9H0F5 515 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 GANQ9H2C0 597 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 LRRC4Q9HBW1 653 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 CA14Q9ULX7 337 aa22.87■■□□□ 1.25
CLN3-207ENST00000395653 KRBA1A5PL33 1030 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 ARNTLO00327 626 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 THAP12O43422 761 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 TKTL1P51854 596 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 PTK2Q05397 1052 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 DRAP1Q14919 205 aaPredicted RBP22.86■■□□□ 1.25
CLN3-207ENST00000395653 SYCP1Q15431 976 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 ZNF77Q15935 545 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 ERGIC2Q96RQ1 377 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 CCSER2Q9H7U1 834 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 ACP6Q9NPH0 428 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 CYLDQ9NQC7 956 aa22.86■■□□□ 1.25
CLN3-207ENST00000395653 KIF26AQ9ULI4 1882 aaPredicted RBP22.86■■□□□ 1.25
CLN3-207ENST00000395653 COCHO43405 550 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 TLR5O60602 858 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 PDGFBP01127 241 aaPredicted RBP22.85■■□□□ 1.25
CLN3-207ENST00000395653 PGFP49763 221 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 KLK7P49862 253 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 PRKCQQ04759 706 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 SLC44A4Q53GD3 710 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 PM20D1Q6GTS8 502 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 FBXL6Q8N531 539 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 RIN3Q8TB24 985 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 SH3RF2Q8TEC5 729 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 HSFY1Q96LI6 401 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 STK33Q9BYT3 514 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 NMUR1Q9HB89 426 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 FAM207AQ9NSI2 230 aaPredicted RBP22.85■■□□□ 1.25
CLN3-207ENST00000395653 CPQQ9Y646 472 aa22.85■■□□□ 1.25
CLN3-207ENST00000395653 HELZP42694 1942 aaKnown RBP22.85■■□□□ 1.25
CLN3-207ENST00000395653 A0A1W2PQH9 124 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 ZBED1O96006 694 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 CLCN1P35523 988 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 GPD2P43304 727 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 BPIFB4P59827 614 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 TPM4P67936 248 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms