RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 NBNO60934 754 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 GALTP07902 379 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 HDCP19113 662 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 MATKP42679 507 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 TBX4P57082 545 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 COG7P83436 770 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 CUL1Q13616 776 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 CSRP2Q16527 193 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 Q6ZUG5 572 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 PARD3BQ8TEW8 1205 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 ARHGEF26Q96DR7 871 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 RUNDC3BQ96NL0 473 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 NAA15Q9BXJ9 866 aaKnown RBP8.48□□□□□ -1.05
LIMS1-203ENST00000393310 TRIM8Q9BZR9 551 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 IGSF5Q9NSI5 407 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 CROTQ9UKG9 612 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 PCDHB3Q9Y5E6 796 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 PDE2AO00408 941 aaPredicted RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 DNAJC6O75061 913 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 ZNF623O75123 536 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 GADD45BO75293 160 aaPredicted RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 PFKLP17858 780 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 HOXD12P35452 270 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 NOP14P78316 857 aaKnown RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 STAT4Q14765 748 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 LRRC31Q6UY01 552 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 INTS8Q75QN2 995 aaKnown RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 ZNF668Q96K58 619 aaPredicted RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 FAM227BQ96M60 508 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 SMAD5Q99717 465 aaKnown RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 RIOX1Q9H6W3 641 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 FANCFQ9NPI8 374 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 SEMA4GQ9NTN9 838 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 OBP2AQ9NY56 170 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 POLG2Q9UHN1 485 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 HPCAL4Q9UM19 191 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 A0A1W2PRQ8 180 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 DCDC2BA2VCK2 349 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 NRP1O14786 923 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 GJB6O95452 261 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 NFICP08651 508 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 STAT6P42226 847 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 ROR2Q01974 943 aaKnown RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 DPYDQ12882 1025 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CCDC25Q86WR0 208 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 C4orf19Q8IY42 314 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 ING5Q8WYH8 240 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 SH3KBP1Q96B97 665 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 TUBGCP6Q96RT7 1819 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 NUDT16L1Q9BRJ7 211 aaKnown RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CENPOQ9BU64 300 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 YIPF2Q9BWQ6 316 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 ACE2Q9BYF1 805 aaPredicted RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CTAGE9A4FU28 777 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 C2CD4DB7Z1M9 353 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 GOLGA8MH3BSY2 632 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 PODXLO00592 558 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 TSC22D2O75157 780 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 ADCY5O95622 1261 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 LAMP2P13473 410 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CD19P15391 556 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 STMN1P16949 149 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 NBL1P41271 181 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 SLC11A2P49281 568 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 MXI1P50539 228 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CYP27A1Q02318 531 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 UBXN1Q04323 297 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 ZNF667Q5HYK9 610 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 USP53Q70EK8 1073 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 WFIKKN2Q8TEU8 576 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CGRRF1Q99675 332 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 KXD1Q9BQD3 176 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CIPCQ9C0C6 399 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 PLEKHA5Q9HAU0 1116 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 KCND2Q9NZV8 630 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CDY1Q9Y6F8 540 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 POLR2EP19388 210 aaKnown RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 ASIC2Q16515 512 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CTAGE6Q86UF2 777 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 FAM186BQ8IYM0 893 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 CLP1Q92989 425 aaKnown RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 STMN2Q93045 179 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 FBXO32Q969P5 355 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 C8orf4Q9NR00 106 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 DDX28Q9NUL7 540 aaKnown RBP8.47□□□□□ -1.05
LIMS1-203ENST00000393310 MOSPD1Q9UJG1 213 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 PCDHGA4Q9Y5G9 962 aa8.47□□□□□ -1.05
LIMS1-203ENST00000393310 WDR91A4D1P6 747 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 CHADO15335 359 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 NMT2O60551 498 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 TMEM127O75204 238 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 PPP1R37O75864 691 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 TUBB4AP04350 444 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 CHGBP05060 677 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 CASP6P55212 293 aa8.46□□□□□ -1.05
LIMS1-203ENST00000393310 GSCP56915 257 aaPredicted RBP8.46□□□□□ -1.05
LIMS1-203ENST00000393310 MRPS15P82914 257 aaKnown RBP8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms