RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 EIF3EP60228 445 aaKnown RBP10.08□□□□□ -0.8
COL6A3-204ENST00000392003 MOGSQ13724 837 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 TFDP2Q14188 446 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 FAM187BQ17R55 369 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 RNASEH2BQ5TBB1 312 aaKnown RBP10.08□□□□□ -0.8
COL6A3-204ENST00000392003 OLFML1Q6UWY5 402 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 GPR142Q7Z601 462 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 XYLT1Q86Y38 959 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 SLC4A11Q8NBS3 891 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 SLC35B2Q8TB61 432 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 CPB2Q96IY4 423 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 MAGEB18Q96M61 343 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 TUT1Q9H6E5 874 aaKnown RBP10.08□□□□□ -0.8
COL6A3-204ENST00000392003 RSAD1Q9HA92 442 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 KIAA1257Q9ULG3 409 aa10.08□□□□□ -0.8
COL6A3-204ENST00000392003 DCAF8L1A6NGE4 600 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 UNCXA6NJT0 531 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 DNM1LO00429 736 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 ALOX15BO15296 676 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 CILPO75339 1184 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 VTNP04004 478 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 GNAT1P11488 350 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 HOXD11P31277 338 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 FKBP1BP68106 108 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 MYBPC3Q14896 1274 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 TAF1CQ15572 869 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 KBTBD12Q3ZCT8 623 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 MAP7D3Q8IWC1 876 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 PALM2Q8IXS6 379 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 CYP4X1Q8N118 509 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 GBP7Q8N8V2 638 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 ATP11CQ8NB49 1132 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 GRAMD1AQ96CP6 724 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 TRABDQ9H4I3 376 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 OCEL1Q9H607 264 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 PIDD1Q9HB75 910 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 KLHL14Q9P2G3 628 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 ARL2BPQ9Y2Y0 163 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 PTPRFP10586 1907 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 EIF3FO00303 357 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 PRPSAP2O60256 369 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 ERBB2P04626 1255 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 GPD1P21695 349 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 SNX16P57768 344 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 SLC25A11Q02978 314 aaKnown RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 SPARCL1Q14515 664 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 STILQ15468 1287 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 FAM133BQ5BKY9 247 aaKnown RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 SPRYD7Q5W111 196 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 DARS2Q6PI48 645 aaKnown RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 PDIK1LQ8N165 341 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 CCDC63Q8NA47 563 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 UBA3Q8TBC4 463 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 ELOVL4Q9GZR5 314 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 SDCBP2Q9H190 292 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 PDZD7Q9H5P4 517 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 TJP2Q9UDY2 1190 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 SLC24A2Q9UI40 661 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 ITGA11Q9UKX5 1188 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 BARX2Q9UMQ3 279 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 USP18Q9UMW8 372 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 SMG5Q9UPR3 1016 aaKnown RBP10.07□□□□□ -0.8
COL6A3-204ENST00000392003 A0A0G2JMZ2 1700 aa10.07□□□□□ -0.8
COL6A3-204ENST00000392003 FOXO6A8MYZ6 492 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 MIPP30301 263 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 KRT81Q14533 505 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 TDRPQ86YL5 185 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 ANKMY2Q8IV38 441 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 TAB3Q8N5C8 712 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 KIF12Q96FN5 646 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 CNPY3Q9BT09 278 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 NT5C1AQ9BXI3 368 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 UBE2OQ9C0C9 1292 aaKnown RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 IFT122Q9HBG6 1241 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 DPP3Q9NY33 737 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 PSMC3IPQ9P2W1 217 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 SAE1Q9UBE0 346 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 NDUFB5O43674 189 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 SPAG7O75391 227 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 DNAJC8O75937 253 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 RBP3P10745 1247 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 PDGFRAP16234 1089 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 IL1R2P27930 398 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 PAPOLAP51003 745 aaKnown RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 CDH6P55285 790 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 BASP1P80723 227 aaKnown RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 ARHGAP1Q07960 439 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 BBS9Q3SYG4 887 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 CXorf38Q8TB03 319 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 PRCCQ92733 491 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 TINF2Q9BSI4 451 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 PITPNM3Q9BZ71 974 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 ABHD16BQ9H3Z7 469 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 HAUS2Q9NVX0 235 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 CYTH4Q9UIA0 394 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 COL1A2P08123 1366 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 H7C0C1 242 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 TRUB2O95900 331 aaKnown RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 ARF4P18085 180 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 CA4P22748 312 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms