RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 PDCD2Q16342 344 aaPredicted RBP22.02■■□□□ 1.12
UPF3A-202ENST00000375299 JOSD2Q8TAC2 188 aa22.02■■□□□ 1.12
UPF3A-202ENST00000375299 TUBGCP5Q96RT8 1024 aa22.02■■□□□ 1.12
UPF3A-202ENST00000375299 CCDC106Q9BWC9 280 aa22.02■■□□□ 1.12
UPF3A-202ENST00000375299 ZNF341Q9BYN7 854 aa22.02■■□□□ 1.12
UPF3A-202ENST00000375299 PCDHGC3Q9UN70 934 aa22.02■■□□□ 1.12
UPF3A-202ENST00000375299 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP22.02■■□□□ 1.11
UPF3A-202ENST00000375299 ASNSP08243 561 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 CDC16Q13042 620 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 KCNJ11Q14654 390 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 SLC5A9Q2M3M2 681 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 MTERF2Q49AM1 385 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 TMCO4Q5TGY1 634 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 C1orf146Q5VVC0 180 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 GPRASP2Q96D09 838 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 TTC1Q99614 292 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 TTLL3Q9Y4R7 772 aa22.02■■□□□ 1.11
UPF3A-202ENST00000375299 DCAF8L1A6NGE4 600 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 WDR46O15213 610 aaKnown RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 BAG2O95816 211 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 CST3P01034 146 aaPredicted RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 C1QAP02745 245 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 KRT3P12035 628 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 GSTT1P30711 240 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 STIP1P31948 543 aaKnown RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 EMC2Q15006 297 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 TEX44Q53QW1 395 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 ANGEL2Q5VTE6 544 aaKnown RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 CCDC60Q8IWA6 550 aaPredicted RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 PPM1NQ8N819 430 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 MTBPQ96DY7 904 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 TARS2Q9BW92 718 aaKnown RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 DMAP1Q9NPF5 467 aaPredicted RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 CISHQ9NSE2 258 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 PCMTD2Q9NV79 361 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 SIRPGQ9P1W8 387 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 TELO2Q9Y4R8 837 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 A0A0B4J269 797 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 KRT37O76014 449 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 ATP5BP06576 529 aaKnown RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 SNRPAP09012 282 aaKnown RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 ERFP50548 548 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 MRPS5P82675 430 aaKnown RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 CHI3L2Q15782 390 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 CES4AQ5XG92 561 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 KYAT3Q6YP21 454 aaKnown RBP22.01■■□□□ 1.11
UPF3A-202ENST00000375299 FAM83AQ86UY5 434 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 CTAGE3PQ8IX95 158 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 KIAA0319LQ8IZA0 1049 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 TFAP2BQ92481 460 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 PPP2R3CQ969Q6 453 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 CFAP36Q96G28 342 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 C1orf21Q9H246 121 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 PGAP2Q9UHJ9 254 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 ZNF180Q9UJW8 692 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 PPM1HQ9ULR3 514 aa22.01■■□□□ 1.11
UPF3A-202ENST00000375299 FKBP6O75344 327 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 CCNFP41002 786 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 AQP5P55064 265 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 CNPY1Q3B7I2 92 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 PTPN20Q4JDL3 420 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 CRLF3Q8IUI8 442 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 FNIP1Q8TF40 1166 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 KCNN1Q92952 543 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 ADGRA2Q96PE1 1338 aa22■■□□□ 1.11
UPF3A-202ENST00000375299 CCDC195A0A1B0GUA6 201 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 K7ERI5 159 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 USP1O94782 785 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 KITP10721 976 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 KCNA2P16389 499 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 CCND2P30279 289 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 ROR1Q01973 937 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 SEZ6Q53EL9 994 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 WDR78Q5VTH9 848 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 KCTD6Q8NC69 237 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 DEPTORQ8TB45 409 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 SPATA18Q8TC71 538 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 TMEM143Q96AN5 459 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 MKS1Q9NXB0 559 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 IL1RAPL1Q9NZN1 696 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 FBXO40Q9UH90 709 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 COL4A5P29400 1685 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 LRRIQ4A6NIV6 560 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 CHADO15335 359 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 BUD23O43709 281 aaKnown RBP21.99■■□□□ 1.11
UPF3A-202ENST00000375299 POLR2BP30876 1174 aaKnown RBP21.99■■□□□ 1.11
UPF3A-202ENST00000375299 CDK7P50613 346 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 ALDH18A1P54886 795 aaKnown RBP21.99■■□□□ 1.11
UPF3A-202ENST00000375299 TGFB2P61812 414 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 SP4Q02446 784 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 MAP3K10Q02779 954 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 SYCP2LQ5T4T6 812 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 NUDCD3Q8IVD9 361 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 SPATA16Q9BXB7 569 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 NIF3L1Q9GZT8 377 aa21.99■■□□□ 1.11
UPF3A-202ENST00000375299 ZNF395Q9H8N7 513 aaPredicted RBP21.99■■□□□ 1.11
UPF3A-202ENST00000375299 MARCOQ9UEW3 520 aaPredicted RBP21.99■■□□□ 1.11
UPF3A-202ENST00000375299 KAT6AQ92794 2004 aa21.98■■□□□ 1.11
UPF3A-202ENST00000375299 PRR5-ARHGAP8B1AHC4 643 aa21.98■■□□□ 1.11
UPF3A-202ENST00000375299 AVILO75366 819 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms