RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 ZNF235Q14590 738 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 TSNQ15631 228 aaKnown RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 TRIP4Q15650 581 aaPredicted RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 CYP4Z1Q86W10 505 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 RYBPQ8N488 228 aaPredicted RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 MPP4Q96JB8 637 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 AGBL1Q96MI9 1066 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 MCEEQ96PE7 176 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 FAM111AQ96PZ2 611 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 TMEM117Q9H0C3 514 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 TRAFD1O14545 582 aaPredicted RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 VIL1P09327 827 aaKnown RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 MLH1P40692 756 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 STAT5AP42229 794 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 CCT8P50990 548 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 STAT5BP51692 787 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 PLOD1Q02809 727 aaPredicted RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 FRG1Q14331 258 aaKnown RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 ZYXQ15942 572 aaKnown RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 RBBP7Q16576 425 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 FAM92BQ6ZTR7 304 aa10.53□□□□□ -0.72
PTCH1-204ENST00000375290 RP9Q8TA86 221 aaKnown RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 FARP1Q9Y4F1 1045 aaPredicted RBP10.53□□□□□ -0.72
PTCH1-204ENST00000375290 DNALI1O14645 258 aaPredicted RBP10.52□□□□□ -0.72
PTCH1-204ENST00000375290 UBDO15205 165 aa10.52□□□□□ -0.72
PTCH1-204ENST00000375290 SLC18A1P54219 525 aa10.52□□□□□ -0.72
PTCH1-204ENST00000375290 PMS1P54277 932 aaKnown RBP10.52□□□□□ -0.72
PTCH1-204ENST00000375290 COPZ1P61923 177 aa10.52□□□□□ -0.72
PTCH1-204ENST00000375290 ZNF544Q6NX49 715 aa10.52□□□□□ -0.72
PTCH1-204ENST00000375290 CCNA2P20248 432 aa10.52□□□□□ -0.72
PTCH1-204ENST00000375290 ETFBP38117 255 aa10.52□□□□□ -0.72
PTCH1-204ENST00000375290 PTDSS1P48651 473 aaKnown RBP10.52□□□□□ -0.72
PTCH1-204ENST00000375290 RASSF5Q8WWW0 418 aa10.52□□□□□ -0.72
PTCH1-204ENST00000375290 EFR3BQ9Y2G0 817 aa10.52□□□□□ -0.72
PTCH1-204ENST00000375290 CST8O60676 142 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ZNF23P17027 643 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 PCSK1P29120 753 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 CUL2Q13617 745 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 SPANXN3Q5MJ09 141 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 LZTS1Q9Y250 596 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 SFI1A8K8P3 1242 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 DNAJA2O60884 412 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ECM2O94769 699 aaPredicted RBP10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ABRAXAS1Q6UWZ7 409 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 FBXO36Q8NEA4 188 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 KBTBD8Q8NFY9 601 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 OR6P1Q8NGX9 317 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 OR2W6PQ8NHA6 318 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 AGPAT3Q9NRZ7 376 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 FAM205AQ6ZU69 1335 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 FAM95CA0A1B0GW59 222 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 DDHD2O94830 711 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ATP6V1B1P15313 513 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 TMCO4Q5TGY1 634 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 HHIPL2Q6UWX4 724 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ARHGEF19Q8IW93 802 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 CCDC60Q8IWA6 550 aaPredicted RBP10.52□□□□□ -0.73
PTCH1-204ENST00000375290 GDPD5Q8WTR4 605 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 GPRASP2Q96D09 838 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ACOT9Q9Y305 439 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 TCHHQ07283 1943 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 CD163L1Q9NR16 1453 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 PI4K2BG5E9Z4 385 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 RNF103O00237 685 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 CAMTA2O94983 1202 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 PIK3R1P27986 724 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ANTXR2P58335 489 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 WASHC5Q12768 1159 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ADHFE1Q8IWW8 467 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 RBAK-RBAKDNI3L0D1 243 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 MYCNP04198 464 aaPredicted RBP10.52□□□□□ -0.73
PTCH1-204ENST00000375290 DDR2Q16832 855 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 KHDRBS2Q5VWX1 349 aaKnown RBP10.52□□□□□ -0.73
PTCH1-204ENST00000375290 DHFR2Q86XF0 187 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 CHADO15335 359 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 FOXN1O15353 648 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ERBB2P04626 1255 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 PAX3P23760 479 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ALDH5A1P51649 535 aaPredicted RBP10.52□□□□□ -0.73
PTCH1-204ENST00000375290 PTPN21Q16825 1174 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 C6orf10Q5SRN2 563 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ZNF572Q7Z3I7 529 aaPredicted RBP10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ANKRD13AQ8IZ07 590 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 TAB3Q8N5C8 712 aaPredicted RBP10.52□□□□□ -0.73
PTCH1-204ENST00000375290 CELF4Q9BZC1 486 aaKnown RBP10.52□□□□□ -0.73
PTCH1-204ENST00000375290 C3orf18Q9UK00 162 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 SNX13Q9Y5W8 968 aa10.52□□□□□ -0.73
PTCH1-204ENST00000375290 ASTN2O75129 1339 aaPredicted RBP10.51□□□□□ -0.73
PTCH1-204ENST00000375290 SLC16A4O15374 487 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 POLD2P49005 469 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 WDR72Q3MJ13 1102 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 POLNQ7Z5Q5 900 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 TMEM126BQ8IUX1 230 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 BBS2Q9BXC9 721 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 TPBGLP0DKB5 382 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 ZNF554Q86TJ5 538 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 MAB21L3Q8N8X9 362 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 FHDC1Q9C0D6 1143 aaPredicted RBP10.51□□□□□ -0.73
PTCH1-204ENST00000375290 NARFQ9UHQ1 456 aa10.51□□□□□ -0.73
PTCH1-204ENST00000375290 PRG3Q9Y2Y8 225 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms