RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 FAM118BQ9BPY3 351 aa16.31■□□□□ 0.2
CCDC40-202ENST00000374876 DDX23Q9BUQ8 820 aaKnown RBP16.31■□□□□ 0.2
CCDC40-202ENST00000374876 ROPN1BQ9BZX4 212 aaPredicted RBP16.31■□□□□ 0.2
CCDC40-202ENST00000374876 CXCL16Q9H2A7 254 aa16.31■□□□□ 0.2
CCDC40-202ENST00000374876 ROPN1Q9HAT0 212 aaPredicted RBP16.31■□□□□ 0.2
CCDC40-202ENST00000374876 AAASQ9NRG9 546 aa16.31■□□□□ 0.2
CCDC40-202ENST00000374876 KRT1P04264 644 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 CHKAP35790 457 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 MMP13P45452 471 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 PPP2R2DQ66LE6 453 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 ABI1Q8IZP0 508 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 CENPTQ96BT3 561 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 XYLT2Q9H1B5 865 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 RPF1Q9H9Y2 349 aaKnown RBP16.3■□□□□ 0.2
CCDC40-202ENST00000374876 RSAD1Q9HA92 442 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 NXF1Q9UBU9 619 aaKnown RBP16.3■□□□□ 0.2
CCDC40-202ENST00000374876 PCDHGC3Q9UN70 934 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 COL4A6Q14031 1691 aa16.3■□□□□ 0.2
CCDC40-202ENST00000374876 PI4K2BG5E9Z4 385 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 IL18RAPO95256 599 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 KRT19P08727 400 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 LMNB2Q03252 620 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 LRRC38Q5VT99 294 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 KAZNQ674X7 775 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 FIBCD1Q8N539 461 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 SP7Q8TDD2 431 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 TFAP2BQ92481 460 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 ZFP42Q96MM3 310 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 GAD1Q99259 594 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 TTYH1Q9H313 450 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 MIOSQ9NXC5 875 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 FNDC1Q4ZHG4 1894 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 F8VP50 259 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 MEFVO15553 781 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 TJP3O95049 919 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 CXCL8P10145 99 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 CD19P15391 556 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 CHN1P15882 459 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 CDH5P33151 784 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 MLH1P40692 756 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 AUHQ13825 339 aaKnown RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 PIGHQ14442 188 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 DCAF4L1Q3SXM0 396 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 ATP13A4Q4VNC1 1196 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 ERMARDQ5T6L9 678 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 GLB1LQ6UWU2 654 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 Q7L0L9 218 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 TAOK1Q7L7X3 1001 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 ANKS1BQ7Z6G8 1248 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 TADA2BQ86TJ2 420 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 WDTC1Q8N5D0 677 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 OTUD6BQ8N6M0 293 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 SLITRK1Q96PX8 696 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 XPO6Q96QU8 1125 aaKnown RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 ZNF576Q9H609 170 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 GGA2Q9UJY4 613 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 NEU2Q9Y3R4 380 aa16.29■□□□□ 0.2
CCDC40-202ENST00000374876 MRPL42Q9Y6G3 142 aaKnown RBP16.29■□□□□ 0.2
CCDC40-202ENST00000374876 TCRBV5S1A1TA0A578 114 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 ARL5CA6NH57 179 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 HOXA2O43364 376 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 TTC4O95801 387 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 POMCP01189 267 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 MCF2P10911 925 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 KRT10P13645 584 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 TCF4P15884 667 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 ZNF252P-AS1Q0IIN9 211 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 CYP4A22Q5TCH4 519 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 SMYD5Q6GMV2 418 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 CMTR2Q8IYT2 770 aaKnown RBP16.28■□□□□ 0.2
CCDC40-202ENST00000374876 C17orf80Q9BSJ5 609 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 DNAJC17Q9NVM6 304 aaKnown RBP16.28■□□□□ 0.2
CCDC40-202ENST00000374876 STRIP2Q9ULQ0 834 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 POLIQ9UNA4 740 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 CHD9Q3L8U1 2897 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 MED7O43513 233 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 RECQL4O94761 1208 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 POLR2BP30876 1174 aaKnown RBP16.28■□□□□ 0.2
CCDC40-202ENST00000374876 OGDHQ02218 1023 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 LONRF1Q17RB8 773 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 ZNF667Q5HYK9 610 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 NOMO2Q5JPE7 1267 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 PPP1R15BQ5SWA1 713 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 IZUMO3Q5VZ72 239 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 MFSD7Q6UXD7 560 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 YTHDF3Q7Z739 585 aaKnown RBP16.28■□□□□ 0.2
CCDC40-202ENST00000374876 CPLX4Q7Z7G2 160 aa16.28■□□□□ 0.2
CCDC40-202ENST00000374876 MYO9BQ13459 2157 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 LIASO43766 372 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 LIG3P49916 1009 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 COPS2P61201 443 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 KYNUQ16719 465 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 WDR72Q3MJ13 1102 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 TNFAIP8L3Q5GJ75 292 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 SPOUT1Q5T280 376 aaKnown RBP16.27■□□□□ 0.2
CCDC40-202ENST00000374876 DENND1BQ6P3S1 775 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 SPOCD1Q6ZMY3 1216 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 APBB1IPQ7Z5R6 666 aaPredicted RBP16.27■□□□□ 0.2
CCDC40-202ENST00000374876 HACE1Q8IYU2 909 aa16.27■□□□□ 0.2
CCDC40-202ENST00000374876 MICALL1Q8N3F8 863 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms