RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FAXCQ5TGI0 409 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 FAM91A1Q658Y4 838 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 DARS2Q6PI48 645 aaKnown RBP17.07■□□□□ 0.32
SDC4-201ENST00000372733 RIPOR1Q6ZS17 1223 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 WDR49Q8IV35 697 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 ARHGAP24Q8N264 748 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 DHX33Q9H6R0 707 aaKnown RBP17.07■□□□□ 0.32
SDC4-201ENST00000372733 POLIQ9UNA4 740 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 A8MXQ7 604 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 UGT1A9O60656 530 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 C1QAP02745 245 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 OATP04181 439 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 MRPS5P82675 430 aaKnown RBP17.07■□□□□ 0.32
SDC4-201ENST00000372733 SP2Q02086 613 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 CAPSQ13938 189 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 NBPF20Q3BBV1 942 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 FKBP1CQ5VVH2 108 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 SLC26A11Q86WA9 606 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 GATA6Q92908 595 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 FAF2Q96CS3 445 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 PANX3Q96QZ0 392 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 TCHPQ9BT92 498 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 UGT1A7Q9HAW7 530 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 UGT1A10Q9HAW8 530 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 UGT1A8Q9HAW9 530 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 KCNK4Q9NYG8 393 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 KAT6AQ92794 2004 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 SIP14410 1827 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 KLF11O14901 512 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 MAFGO15525 162 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 USP1O94782 785 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 ATG7O95352 703 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 ERBB2P04626 1255 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 ASPAP45381 313 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 YWHAZP63104 245 aaKnown RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 TFAMQ00059 246 aaKnown RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 ROR2Q01974 943 aaKnown RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 RBBP5Q15291 538 aaKnown RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 CHI3L2Q15782 390 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 ZNF699Q32M78 642 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 TTC39BQ5VTQ0 682 aaPredicted RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 SNRNP48Q6IEG0 339 aaKnown RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 CCNJLQ8IV13 435 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 GALNT15Q8N3T1 639 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 SMC1BQ8NDV3 1235 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 NSUN6Q8TEA1 469 aaKnown RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 SLC7A3Q8WY07 619 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 DDX50Q9BQ39 737 aaKnown RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 SLC13A1Q9BZW2 595 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 WDR35Q9P2L0 1181 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 COL4A5P29400 1685 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 FAM189A1O60320 539 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 MAGEC1O60732 1142 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 RAB27AP51159 221 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 RAB6CQ53S08 254 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 IZUMO2Q6UXV1 221 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 MFN1Q8IWA4 741 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 TMEM130Q8N3G9 435 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 SLC25A41Q8N5S1 370 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 SHKBP1Q8TBC3 707 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 PEBP4Q96S96 227 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 RAB6CQ9H0N0 254 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 RAB6BQ9NRW1 208 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 NXF1Q9UBU9 619 aaKnown RBP17.06■□□□□ 0.32
SDC4-201ENST00000372733 ANGPTL2Q9UKU9 493 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 PLA2G4CQ9UP65 541 aa17.06■□□□□ 0.32
SDC4-201ENST00000372733 MAGEA13PA6NCF6 341 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 DCAF8L1A6NGE4 600 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 MEI4A8MW99 385 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 ANPEPP15144 967 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 POLR2BP30876 1174 aaKnown RBP17.05■□□□□ 0.32
SDC4-201ENST00000372733 ALDH18A1P54886 795 aaKnown RBP17.05■□□□□ 0.32
SDC4-201ENST00000372733 POLE2P56282 527 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 MAP3K10Q02779 954 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 TRPC3Q13507 836 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 XYLT1Q86Y38 959 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 TMPRSS6Q8IU80 811 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 SCUBE1Q8IWY4 988 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 ULK2Q8IYT8 1036 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 E2F7Q96AV8 911 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 TRIM56Q9BRZ2 755 aaKnown RBP17.05■□□□□ 0.32
SDC4-201ENST00000372733 THTPAQ9BU02 230 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 ZNF302Q9NR11 478 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 PLLPQ9Y342 182 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 PSME4Q14997 1843 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 AQP5P55064 265 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 TEX44Q53QW1 395 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 CMASQ8NFW8 434 aaPredicted RBP17.05■□□□□ 0.32
SDC4-201ENST00000372733 C7orf26Q96N11 449 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 PLAC1Q9HBJ0 212 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 SMYD2Q9NRG4 433 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 ZNF277Q9NRM2 450 aaPredicted RBP17.05■□□□□ 0.32
SDC4-201ENST00000372733 USP18Q9UMW8 372 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 FER1L6Q2WGJ9 1857 aa17.05■□□□□ 0.32
SDC4-201ENST00000372733 H7C0C1 242 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 MAP3K6O95382 1288 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 TOP3BO95985 862 aaKnown RBP17.04■□□□□ 0.32
SDC4-201ENST00000372733 GSTA2P09210 222 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 ATP5OP48047 213 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 YWHAEP62258 255 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms