RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MAFBQ9Y5Q3 323 aaPredicted RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 ADGRA2Q96PE1 1338 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 BRWD3Q6RI45 1802 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 LSM8O95777 96 aaKnown RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 NFICP08651 508 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 PGM1P36871 562 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 BLMHQ13867 455 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 RASA2Q15283 850 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 CHI3L2Q15782 390 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 PPP1R15BQ5SWA1 713 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 XRRA1Q6P2D8 792 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 TTC1Q99614 292 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 ACO2Q99798 780 aaKnown RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 MAGEB5Q9BZ81 275 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 SDCBP2Q9H190 292 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 TAS2R1Q9NYW7 299 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 MAGED2Q9UNF1 606 aaPredicted RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 I3L4J1 428 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 MSCO60682 206 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 LUC7L3O95232 432 aaKnown RBP12.64□□□□□ -0.39
CLIP3-201ENST00000360535 RBL1P28749 1068 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 GHRHRQ02643 423 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 C12orf29Q8N999 325 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 CFAP61Q8NHU2 1237 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 MIS12Q9H081 205 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 CNTN6Q9UQ52 1028 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 WASF2Q9Y6W5 498 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 MICAL2O94851 1124 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 PGK2P07205 417 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 CRADDP78560 199 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 LRRC36Q1X8D7 754 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 CTC1Q2NKJ3 1217 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 THEMIS2Q5TEJ8 643 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 XYLT1Q86Y38 959 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 FBXO41Q8TF61 875 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 RXFP2Q8WXD0 754 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 SCG3Q8WXD2 468 aaKnown RBP12.64□□□□□ -0.39
CLIP3-201ENST00000360535 THTPAQ9BU02 230 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 R3HDMLQ9H3Y0 253 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 DCLRE1BQ9H816 532 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 CYLDQ9NQC7 956 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 STK32BQ9NY57 414 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 SLC17A6Q9P2U8 582 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 MEI4A8MW99 385 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 TM9SF1O15321 606 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 PRPSAP2O60256 369 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 SMIM24O75264 130 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 ZBED1O96006 694 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 AMPD1P23109 780 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 RFC5P40937 340 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 GMPSP49915 693 aaPredicted RBP12.64□□□□□ -0.39
CLIP3-201ENST00000360535 CDK16Q00536 496 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 TAP1Q03518 808 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 ATF7IP2Q5U623 682 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 RGS9BPQ6ZS82 235 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 HIPK4Q8NE63 616 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 OXNAD1Q96HP4 312 aaPredicted RBP12.64□□□□□ -0.39
CLIP3-201ENST00000360535 DDX50Q9BQ39 737 aaKnown RBP12.64□□□□□ -0.39
CLIP3-201ENST00000360535 VPS11Q9H270 941 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 RPF1Q9H9Y2 349 aaKnown RBP12.64□□□□□ -0.39
CLIP3-201ENST00000360535 AS3MTQ9HBK9 375 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 KCNG1Q9UIX4 513 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 NFASCO94856 1347 aa12.64□□□□□ -0.39
CLIP3-201ENST00000360535 EME2A4GXA9 379 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-201ENST00000360535 APOC4-APOC2K7ER74 178 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 TRUB2O95900 331 aaKnown RBP12.63□□□□□ -0.39
CLIP3-201ENST00000360535 APOC2P02655 101 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 HMGCRP04035 888 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 HOXC6P09630 235 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 HSDL1Q3SXM5 330 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 ANGEL2Q5VTE6 544 aaKnown RBP12.63□□□□□ -0.39
CLIP3-201ENST00000360535 C16orf46Q6P387 395 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 NUDCD3Q8IVD9 361 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 UNC5BQ8IZJ1 945 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 ZNF276Q8N554 614 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 COPS5Q92905 334 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 APOPT1Q96IL0 206 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 CPB2Q96IY4 423 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 KCNK13Q9HB14 408 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 FAM49BQ9NUQ9 324 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 STOML1Q9UBI4 398 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 MED7O43513 233 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 TBX10O75333 385 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 WFS1O76024 890 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 F7P08709 466 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-201ENST00000360535 LINGO3P0C6S8 592 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 BCAR1P56945 870 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 PTPN11Q06124 597 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-201ENST00000360535 BST1Q10588 318 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 WASHC2DQ5SRD0 308 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 TRMT10BQ6PF06 316 aaKnown RBP12.63□□□□□ -0.39
CLIP3-201ENST00000360535 REPS2Q8NFH8 660 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 MZB1Q8WU39 189 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 CNKSR2Q8WXI2 1034 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 MMP19Q99542 508 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 SYT15Q9BQS2 421 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 CEP41Q9BYV8 373 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 ZNF518BQ9C0D4 1074 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 ELOVL4Q9GZR5 314 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 XYLT2Q9H1B5 865 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms