RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 CYFIP2Q96F07 1278 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 PRR11Q96HE9 360 aaPredicted RBP1.84□□□□□ -2.11
BRCA1-202ENST00000354071 MESP1Q9BRJ9 268 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 TEX101Q9BY14 249 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ZDHHC8Q9ULC8 765 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 CNTN6Q9UQ52 1028 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 CDY1Q9Y6F8 540 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 NINLQ9Y2I6 1382 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 LOC102723971A0A1B0GUV8 181 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ANKRD18BA2A2Z9 1011 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 MYO1CO00159 1063 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 SYN3O14994 580 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 KIAA0355O15063 1070 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ZSCAN9O15535 394 aaPredicted RBP1.84□□□□□ -2.11
BRCA1-202ENST00000354071 PIAS2O75928 621 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 MTHFD1P11586 935 aaKnown RBP1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ALDH18A1P54886 795 aaKnown RBP1.84□□□□□ -2.11
BRCA1-202ENST00000354071 KRT17Q04695 432 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ARHGEF7Q14155 803 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 FAXCQ5TGI0 409 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 KRT40Q6A162 431 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 TAF2Q6P1X5 1199 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ADGRE4PQ86SQ3 457 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 TP53INP2Q8IXH6 220 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 TMEM57Q8N5G2 664 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ZNF483Q8TF39 744 aaPredicted RBP1.84□□□□□ -2.11
BRCA1-202ENST00000354071 CLEC4CQ8WTT0 213 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 GCDHQ92947 438 aaPredicted RBP1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ZC3H10Q96K80 434 aaKnown RBP1.84□□□□□ -2.11
BRCA1-202ENST00000354071 ZSWIM1Q9BR11 485 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 KRTAP4-9Q9BYQ8 210 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 TWSG1Q9GZX9 223 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 RRP7AQ9Y3A4 280 aaKnown RBP1.84□□□□□ -2.11
BRCA1-202ENST00000354071 PSAT1Q9Y617 370 aa1.84□□□□□ -2.11
BRCA1-202ENST00000354071 MBD3L4A6NDZ8 208 aaPredicted RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 MBD3L3A6NE82 208 aaPredicted RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 MTSS1O43312 755 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 ZBED4O75132 1171 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 ERAL1O75616 437 aaKnown RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 CSF1RP07333 972 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 STAT1P42224 750 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 ADCY7P51828 1080 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 PPP5CP53041 499 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 NLRP5P59047 1200 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 DLG4P78352 724 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 SRSF3P84103 164 aaKnown RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 VWA3BQ502W6 1294 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 LCE3BQ5TA77 95 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 MFSD4BQ5TF39 518 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 NFRKBQ6P4R8 1299 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 PIK3AP1Q6ZUJ8 805 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 SEM1Q6ZVN7 128 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 LDHDQ86WU2 507 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 RASGRP3Q8IV61 690 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 ZNF713Q8N859 430 aaPredicted RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 BPIFB1Q8TDL5 484 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 ZNF384Q8TF68 577 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 HMGB4Q8WW32 186 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 PPP2R3CQ969Q6 453 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 EID2BQ96D98 161 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 ELP4Q96EB1 424 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 MARS2Q96GW9 593 aaKnown RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 TMEM176AQ96HP8 235 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 DPYSL5Q9BPU6 564 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 SPATA5L1Q9BVQ7 753 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 HEMGNQ9BXL5 484 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 ANKRD2Q9GZV1 360 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 RSPH9Q9H1X1 276 aaPredicted RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 TP63Q9H3D4 680 aaPredicted RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 GPR35Q9HC97 309 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 PLSCR4Q9NRQ2 329 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 SIDT1Q9NXL6 827 aaKnown RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 JKAMPQ9P055 326 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 VPS28Q9UK41 221 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 NOL7Q9UMY1 257 aaKnown RBP1.84□□□□□ -2.12
BRCA1-202ENST00000354071 SORCS3Q9UPU3 1222 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 ITIH6Q6UXX5 1313 aa1.84□□□□□ -2.12
BRCA1-202ENST00000354071 UBE2QL1A1L167 161 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 AP3D1O14617 1153 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 CBFA2T3O75081 653 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 HAUS5O94927 633 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 ARIH2O95376 493 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 NTSR2O95665 410 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 GYPEP15421 78 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 POLD1P28340 1107 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 SERPINA4P29622 427 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 HTR7P34969 479 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 IL13P35225 146 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 COPB2P35606 906 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 PAPOLAP51003 745 aaKnown RBP1.83□□□□□ -2.12
BRCA1-202ENST00000354071 IRAK1P51617 712 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 RBM5P52756 815 aaKnown RBP eCLIP1.83□□□□□ -2.12
BRCA1-202ENST00000354071 ACTR2P61160 394 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 IFI35P80217 286 aaPredicted RBP1.83□□□□□ -2.12
BRCA1-202ENST00000354071 HGFACQ04756 655 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 MYBPC2Q14324 1141 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 UBXN2BQ14CS0 331 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 P3H1Q32P28 736 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 PRR31Q5SQ13 230 aa1.83□□□□□ -2.12
BRCA1-202ENST00000354071 AGBL4Q5VU57 503 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms