RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ZNF252P-AS1Q0IIN9 211 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 BST2Q10589 180 aaKnown RBP13.43□□□□□ -0.26
CLK3-201ENST00000345005 GRIK3Q13003 919 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 OR6B2Q6IFH4 312 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 TRAF7Q6Q0C0 670 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 TMEM110Q86TL2 294 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 TTC30AQ86WT1 665 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 UNC93B1Q9H1C4 597 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 DPEP3Q9H4B8 488 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 CYLDQ9NQC7 956 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 METTL5Q9NRN9 209 aaKnown RBP13.43□□□□□ -0.26
CLK3-201ENST00000345005 DDX56Q9NY93 547 aaKnown RBP13.43□□□□□ -0.26
CLK3-201ENST00000345005 E5RJQ4 531 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 GABRDO14764 452 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 RGS16O15492 202 aaPredicted RBP13.42□□□□□ -0.26
CLK3-201ENST00000345005 TTI1O43156 1089 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 ELF1P32519 619 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 LHX1P48742 406 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 AFF1P51825 1210 aaKnown RBP13.42□□□□□ -0.26
CLK3-201ENST00000345005 BFSP2Q13515 415 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 CRYMQ14894 314 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 CYP1B1Q16678 543 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 UPP1Q16831 310 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 HADHQ16836 314 aaKnown RBP13.42□□□□□ -0.26
CLK3-201ENST00000345005 FAM102AQ5T9C2 384 aaPredicted RBP13.42□□□□□ -0.26
CLK3-201ENST00000345005 DAB2IPQ5VWQ8 1189 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 WSCD1Q658N2 575 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 PMF1Q6P1K2 205 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 DSTYKQ6XUX3 929 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 FAM43BQ6ZT52 329 aaPredicted RBP13.42□□□□□ -0.26
CLK3-201ENST00000345005 PIGWQ7Z7B1 504 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 ZNF598Q86UK7 904 aaKnown RBP13.42□□□□□ -0.26
CLK3-201ENST00000345005 ZDHHC17Q8IUH5 632 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 PRELID2Q8N945 189 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 B3GALNT2Q8NCR0 500 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 JOSD2Q8TAC2 188 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 RBM41Q96IZ5 413 aaKnown RBP13.42□□□□□ -0.26
CLK3-201ENST00000345005 UROC1Q96N76 676 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 FTHL17Q9BXU8 183 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 PCYOX1Q9UHG3 505 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 PTPN22Q9Y2R2 807 aa13.42□□□□□ -0.26
CLK3-201ENST00000345005 INPPL1O15357 1258 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 RARAP10276 462 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 SELPP16109 830 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 COPS2P61201 443 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 IRX1P78414 480 aaPredicted RBP13.41□□□□□ -0.26
CLK3-201ENST00000345005 SLC24A5Q71RS6 500 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 POLNQ7Z5Q5 900 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 OSTM1Q86WC4 334 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 DDX42Q86XP3 938 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLK3-201ENST00000345005 C12orf50Q8NA57 414 aaPredicted RBP13.41□□□□□ -0.26
CLK3-201ENST00000345005 OR2W6PQ8NHA6 318 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 SPATA18Q8TC71 538 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 NEUROG2Q9H2A3 272 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 HOMER3Q9NSC5 361 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 ASNSD1Q9NWL6 643 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 HTTP42858 3142 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 CASTOR2A6NHX0 329 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 C9IYK1 514 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 HCRTO43612 131 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 RNF8O76064 485 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 POMCP01189 267 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 KRT7P08729 469 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 CCDC130P13994 396 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 PTPN1P18031 435 aaKnown RBP13.41□□□□□ -0.26
CLK3-201ENST00000345005 ADORA2BP29275 332 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 ACADSBP45954 432 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 RGS7P49802 495 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 SLC8A3P57103 927 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 FAM189BP81408 668 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 SLC6A3Q01959 620 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 TUSC3Q13454 348 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 MBTPS1Q14703 1052 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 ZFYVE27Q5T4F4 411 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 FAM183BPQ6ZVS7 135 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 LRRC8DQ7L1W4 858 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 HSFY1Q96LI6 401 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 ZNF317Q96PQ6 595 aaPredicted RBP13.41□□□□□ -0.26
CLK3-201ENST00000345005 HNRNPABQ99729 332 aaKnown RBP13.41□□□□□ -0.26
CLK3-201ENST00000345005 LPIN3Q9BQK8 851 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 OSBPL8Q9BZF1 889 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 LRRC19Q9H756 370 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 PAK6Q9NQU5 681 aaPredicted RBP13.41□□□□□ -0.26
CLK3-201ENST00000345005 BATF3Q9NR55 127 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 INTS9Q9NV88 658 aaKnown RBP13.41□□□□□ -0.26
CLK3-201ENST00000345005 ATP8A1Q9Y2Q0 1164 aa13.41□□□□□ -0.26
CLK3-201ENST00000345005 TCRBV7S2A1N4TA0A589 114 aa13.4□□□□□ -0.26
CLK3-201ENST00000345005 ARHGEF37A1IGU5 675 aa13.4□□□□□ -0.26
CLK3-201ENST00000345005 GPD1P21695 349 aa13.4□□□□□ -0.26
CLK3-201ENST00000345005 IBSPP21815 317 aaPredicted RBP13.4□□□□□ -0.26
CLK3-201ENST00000345005 GJC1P36383 396 aa13.4□□□□□ -0.26
CLK3-201ENST00000345005 COILP38432 576 aaPredicted RBP13.4□□□□□ -0.26
CLK3-201ENST00000345005 RPL34P49207 117 aaKnown RBP13.4□□□□□ -0.26
CLK3-201ENST00000345005 ZNF143P52747 638 aaPredicted RBP13.4□□□□□ -0.26
CLK3-201ENST00000345005 SIX1Q15475 284 aaPredicted RBP13.4□□□□□ -0.26
CLK3-201ENST00000345005 C11orf91Q3C1V1 193 aa13.4□□□□□ -0.26
CLK3-201ENST00000345005 GLB1LQ6UWU2 654 aa13.4□□□□□ -0.26
CLK3-201ENST00000345005 RTN4RL1Q86UN2 441 aaPredicted RBP13.4□□□□□ -0.26
CLK3-201ENST00000345005 ZDHHC14Q8IZN3 488 aa13.4□□□□□ -0.26
CLK3-201ENST00000345005 SLC2A14Q8TDB8 520 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms