RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TARS2Q9BW92 718 aaKnown RBP23.32■■□□□ 1.32
TRIM28-202ENST00000341753 ASCC2Q9H1I8 757 aaPredicted RBP23.32■■□□□ 1.32
TRIM28-202ENST00000341753 NDE1Q9NXR1 346 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 ARHGAP28Q9P2N2 729 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 CXorf49A8MYA2 514 aaPredicted RBP23.32■■□□□ 1.32
TRIM28-202ENST00000341753 UGT1A9O60656 530 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 CIB2O75838 187 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 RTP1P59025 263 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 SLC18A2Q05940 514 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 TNFAIP1Q13829 316 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 CHI3L2Q15782 390 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 ZCCHC23Q6ZST2 131 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 RAPH1Q70E73 1250 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 TFAP2BQ92481 460 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 HSPH1Q92598 858 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 GORASP1Q9BQQ3 440 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 UGT1A7Q9HAW7 530 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 UGT1A10Q9HAW8 530 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 UGT1A8Q9HAW9 530 aa23.32■■□□□ 1.32
TRIM28-202ENST00000341753 DOCK5Q9H7D0 1870 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 PRR5-ARHGAP8B1AHC4 643 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 I3L4J1 428 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 WEE2P0C1S8 567 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 SFNP31947 248 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 ARHGAP8P85298 464 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 LRRN4Q8WUT4 740 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 RILPQ96NA2 401 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 LRCH4O75427 683 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 TOP3BO95985 862 aaKnown RBP23.31■■□□□ 1.32
TRIM28-202ENST00000341753 PTPN7P35236 360 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 HIRAP54198 1017 aaPredicted RBP23.31■■□□□ 1.32
TRIM28-202ENST00000341753 BACE1P56817 501 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 IRX4P78413 519 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 SLC25A11Q02978 314 aaKnown RBP23.31■■□□□ 1.32
TRIM28-202ENST00000341753 LAMB3Q13751 1172 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 DPYSL3Q14195 570 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 FAXCQ5TGI0 409 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 TRIM56Q9BRZ2 755 aaKnown RBP23.31■■□□□ 1.32
TRIM28-202ENST00000341753 MSTO1Q9BUK6 570 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 C20orf27Q9GZN8 174 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 PDP2Q9P2J9 529 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 PLA2G4CQ9UP65 541 aa23.31■■□□□ 1.32
TRIM28-202ENST00000341753 LRRIQ4A6NIV6 560 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 MAGEC1O60732 1142 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 RNASEH1O60930 286 aaKnown RBP23.3■■□□□ 1.32
TRIM28-202ENST00000341753 STAM2O75886 525 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 STBD1O95210 358 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 EDN1P05305 212 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 RBP3P10745 1247 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 ZNF280AP59817 542 aaPredicted RBP23.3■■□□□ 1.32
TRIM28-202ENST00000341753 GHRHRQ02643 423 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 FSTL1Q12841 308 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 CDC16Q13042 620 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 CNPY1Q3B7I2 92 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 CFAP157Q5JU67 520 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 GSTCDQ8NEC7 633 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 EBF4Q9BQW3 602 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 CALN1Q9BXU9 219 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 EBF3Q9H4W6 596 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 SPECC1L-ADORA2AF8WAN1 911 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 KDELR1P24390 212 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 TBXAS1P24557 533 aaPredicted RBP23.3■■□□□ 1.32
TRIM28-202ENST00000341753 VSIG10LQ86VR7 867 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 TMEM35BQ8NCS4 154 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 MTBPQ96DY7 904 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 SMYD3Q9H7B4 428 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 FBXO40Q9UH90 709 aa23.3■■□□□ 1.32
TRIM28-202ENST00000341753 TM7SF2O76062 418 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 MMRN1Q13201 1228 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 TMEM132BQ14DG7 1078 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 BBS12Q6ZW61 710 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 MYLK4Q86YV6 388 aaPredicted RBP23.29■■□□□ 1.32
TRIM28-202ENST00000341753 CCDC60Q8IWA6 550 aaPredicted RBP23.29■■□□□ 1.32
TRIM28-202ENST00000341753 PYDC1Q8WXC3 89 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 EPAS1Q99814 870 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 SORBS2O94875 1100 aaKnown RBP23.29■■□□□ 1.32
TRIM28-202ENST00000341753 PRKCEQ02156 737 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 CUL3Q13618 768 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 NET1Q7Z628 596 aaPredicted RBP23.29■■□□□ 1.32
TRIM28-202ENST00000341753 KCTD6Q8NC69 237 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 SPATA18Q8TC71 538 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 E2F7Q96AV8 911 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 CYP26B1Q9NR63 512 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 KCNK4Q9NYG8 393 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 CNTN6Q9UQ52 1028 aa23.29■■□□□ 1.32
TRIM28-202ENST00000341753 MAP3K6O95382 1288 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 ZNF132P52740 706 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 ACTR3P61158 418 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 AP2B1P63010 937 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 MRPS5P82675 430 aaKnown RBP23.28■■□□□ 1.32
TRIM28-202ENST00000341753 ORC1Q13415 861 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 C6orf163Q5TEZ5 329 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 ANGEL2Q5VTE6 544 aaKnown RBP23.28■■□□□ 1.32
TRIM28-202ENST00000341753 ARMC3Q5W041 872 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 ZNF526Q8TF50 670 aaPredicted RBP23.28■■□□□ 1.32
TRIM28-202ENST00000341753 C17orf75Q9HAS0 396 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 TAGLN3Q9UI15 199 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 NDC80O14777 642 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 DGAT1O75907 488 aa23.28■■□□□ 1.32
TRIM28-202ENST00000341753 PTPRAP18433 802 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms