RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ABCG1P45844 678 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 CST9Q5W186 159 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 DARS2Q6PI48 645 aaKnown RBP8.76□□□□□ -1.01
HMGB1-203ENST00000341423 CNPY3Q9BT09 278 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 SMYD2Q9NRG4 433 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 ZNHIT2Q9UHR6 403 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 DNPEPQ9ULA0 475 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 HEATR9A2RTY3 570 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 GSAPA4D1B5 854 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 ZNF24P17028 368 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 CCNE1P24864 410 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 NCKAP1LP55160 1127 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 E2F1Q01094 437 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 NCOA4Q13772 614 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 RAET1GQ6H3X3 334 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 TTI2Q6NXR4 508 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 ENOSF1Q7L5Y1 443 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 ANKS1BQ7Z6G8 1248 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 WDCPQ9H6R7 721 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 PKD2L2Q9NZM6 624 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 SLC27A5Q9Y2P5 690 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 LMTK2Q8IWU2 1503 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 GSG1L2A8MUP6 293 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 GRM6O15303 877 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 TRIM16O95361 564 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 IFNA16P05015 189 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 HPCAP84074 193 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 FKBP3Q00688 224 aaKnown RBP8.76□□□□□ -1.01
HMGB1-203ENST00000341423 VARS2Q5ST30 1063 aaKnown RBP8.76□□□□□ -1.01
HMGB1-203ENST00000341423 KAZNQ674X7 775 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 ZNF776Q68DI1 518 aaPredicted RBP8.76□□□□□ -1.01
HMGB1-203ENST00000341423 PPP4R3CPQ6ZMV5 832 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 C3orf67Q6ZVT6 689 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 TMTC1Q8IUR5 882 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 ZFYVE1Q9HBF4 777 aa8.76□□□□□ -1.01
HMGB1-203ENST00000341423 TCRBV21S2A2A0A5A6 115 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 EFCAB7A8K855 629 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 LDOC1O95751 146 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 IGHEP01854 428 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 MARK2Q7KZI7 788 aaKnown RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 C11orf96Q7Z7L8 435 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ENOX1Q8TC92 643 aaKnown RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 HES6Q96HZ4 224 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 TBC1D32Q96NH3 1257 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 PAIP2Q9BPZ3 127 aaKnown RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 JMJD4Q9H9V9 463 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 FAM114A2Q9NRY5 505 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ZNF148Q9UQR1 794 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 VEGFDO43915 354 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 CLEC3AO75596 197 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ASLP04424 464 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 PLS3P13797 630 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ZFXP17010 805 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 BCL2L1Q07817 233 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 OTUB1Q96FW1 271 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 TLR7Q9NYK1 1049 aaKnown RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 LRRD1A4D1F6 860 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 HAX1O00165 279 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 TPD52L2O43399 206 aaKnown RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ACSL4O60488 711 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 NDUFS3O75489 264 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 MCM3P25205 808 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 RGS7P49802 495 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 UBASH3AP57075 661 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 MCM6Q14566 821 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 CARTPTQ16568 116 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 RERGQ96A58 199 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 STMN4Q9H169 189 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 TTYH1Q9H313 450 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 FOXP1Q9H334 677 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ACSS2Q9NR19 701 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 FAM86C1Q9NVL1 165 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 COQ3Q9NZJ6 369 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 MRPS33Q9Y291 106 aaKnown RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 PLEKHA8P1O95397 391 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 DRD1P21728 446 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 CDH3P22223 829 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 CCT8P50990 548 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 MXRA7P84157 204 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 IMPG1Q17R60 797 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 C17orf62Q9BQA9 187 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ADGRE3Q9BY15 652 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 BLZF1Q9H2G9 400 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 LDAHQ9H6V9 325 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ADAM22Q9P0K1 906 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 KIAA1522Q9P206 1035 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-203ENST00000341423 ITGB1BP2Q9UKP3 347 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 SPTA1P02549 2419 aa8.75□□□□□ -1.01
HMGB1-203ENST00000341423 PPP6R2O75170 966 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 LRRN2O75325 713 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 KLF8O95600 359 aaPredicted RBP8.74□□□□□ -1.01
HMGB1-203ENST00000341423 ALPIP09923 528 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 SPDYE7PQ495Y7 208 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 KLHL24Q6TFL4 600 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 LEKR1Q6ZMV7 388 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 FAM35AQ86V20 835 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 C12orf40Q86WS4 652 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 TRAPPC5Q8IUR0 188 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 LGI2Q8N0V4 545 aa8.74□□□□□ -1.01
HMGB1-203ENST00000341423 LMX1AQ8TE12 382 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms