RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HSF2BPO75031 334 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 FBXO21O94952 628 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 SEC31AO94979 1220 aaKnown RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 CDKN2BP42772 138 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 SLC11A1P49279 550 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 CTCFP49711 727 aaPredicted RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 MRPL58Q14197 206 aaKnown RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 LLGL1Q15334 1064 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 MAP9Q49MG5 647 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 TTC27Q6P3X3 843 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 PEBP4Q96S96 227 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 HINFPQ9BQA5 517 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 COLEC11Q9BWP8 271 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 ZWILCHQ9H900 591 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 PNPLA8Q9NP80 782 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 CNGB3Q9NQW8 809 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 FNDC1Q4ZHG4 1894 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-202ENST00000338045 hCG_1818297A0A087WSY0 165 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 LRRD1A4D1F6 860 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 TBKBP1A7MCY6 615 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 GALTP07902 379 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 COILP38432 576 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-202ENST00000338045 PTGIRP43119 386 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 TKTL1P51854 596 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 DR1Q01658 176 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 TFDP3Q5H9I0 405 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 NECAB2Q7Z6G3 386 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 SIX6OS1Q8N1H7 587 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 LRRC43Q8N309 656 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 FAM172AQ8WUF8 416 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 SLCO2A1Q92959 643 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 ACSF2Q96CM8 615 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-202ENST00000338045 HEMGNQ9BXL5 484 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 ZCWPW1Q9H0M4 648 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 HCSTQ9UBK5 93 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 PCSK1NQ9UHG2 260 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 FAN1Q9Y2M0 1017 aa16.19■□□□□ 0.18
LIMS1-202ENST00000338045 KIAA0355O15063 1070 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ATP8B1O43520 1251 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ENDOD1O94919 500 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 TIMP1P01033 207 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 DESP17661 470 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 FGFR3P22607 806 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 BDNFP23560 247 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 MATKP42679 507 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 NDUFV1P49821 464 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 HDAC4P56524 1084 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ATP11AP98196 1134 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 CDO1Q16878 200 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 SMTNL2Q2TAL5 461 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 RAB6CQ53S08 254 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 KCNT1Q5JUK3 1230 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ZFYVE27Q5T4F4 411 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 CCDC137Q6PK04 289 aaKnown RBP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 GPRIN1Q7Z2K8 1008 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 NLRC5Q86WI3 1866 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 AENQ8WTP8 325 aaKnown RBP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 CASKIN2Q8WXE0 1202 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 RHOBTB2Q9BYZ6 727 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 GPR62Q9BZJ7 368 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 RAB6CQ9H0N0 254 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 PLEKHA4Q9H4M7 779 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 DMAP1Q9NPF5 467 aaPredicted RBP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 HOMER3Q9NSC5 361 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 PTPRDP23468 1912 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 KIAA0100Q14667 2235 aaKnown RBP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ABHD14A-ACY1A0A1B0GW23 586 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 PRPSAP2O60256 369 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 DAB1O75553 588 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 DGKIO75912 1065 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 TJP3O95049 919 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 KDELR1P24390 212 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ITGB8P26012 769 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 CARSP49589 748 aaKnown RBP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ARSEP51690 589 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 CDR1P51861 262 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 DAOAP59103 153 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 YWHAZP63104 245 aaKnown RBP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ADCY2Q08462 1091 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 CCNG2Q16589 344 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ODF2Q5BJF6 829 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 VARS2Q5ST30 1063 aaKnown RBP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 C4orf50Q6ZRC1 276 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 STRADAQ7RTN6 431 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 BNIPLQ7Z465 357 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 SCML4Q8N228 414 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 TEKT4Q8WW24 435 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 NT5C3BQ969T7 300 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 SLC2A13Q96QE2 648 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 TBCBQ99426 244 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ADAM33Q9BZ11 813 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 ULBP1Q9BZM6 244 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 DCLK3Q9C098 648 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 NGRNQ9NPE2 291 aaKnown RBP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 CHST7Q9NS84 486 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 LTBP2Q14767 1821 aa16.18■□□□□ 0.18
LIMS1-202ENST00000338045 SF3B1O75533 1304 aaKnown RBP eCLIP16.18■□□□□ 0.18
LIMS1-202ENST00000338045 VWA8A3KMH1 1905 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms