RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 GGT7Q9UJ14 662 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 UBQLN1Q9UMX0 589 aaKnown RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 NEU2Q9Y3R4 380 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 MGEA5O60502 916 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 SPAG7O75391 227 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 ASGR1P07306 291 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 RARGP13631 454 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 BRCC3P46736 316 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 CACNB2Q08289 660 aaPredicted RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 INCA1Q0VD86 236 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 TMED2Q15363 201 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 DARS2Q6PI48 645 aaKnown RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 RHBDF2Q6PJF5 856 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 TP53INP2Q8IXH6 220 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 GRK7Q8WTQ7 553 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 KHSRPQ92945 711 aaKnown RBP eCLIP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 PGLYRP2Q96PD5 576 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 C12orf65Q9H3J6 166 aaKnown RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 RNF186Q9NXI6 227 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 MAGED2Q9UNF1 606 aaPredicted RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 FAM155AB1AL88 458 aaPredicted RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 HAS3O00219 553 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 HUS1O60921 280 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 CTCFP49711 727 aaPredicted RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 DRG2P55039 364 aaKnown RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 VCPP55072 806 aaKnown RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 BCAR1P56945 870 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 PDIA2Q13087 525 aaKnown RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 AUHQ13825 339 aaKnown RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 ZNF268Q14587 947 aaPredicted RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 KCNA10Q16322 511 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 BBS9Q3SYG4 887 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 OLFML1Q6UWY5 402 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 CCDC185Q8N715 623 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 KLF6Q99612 283 aaPredicted RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 SNRNP25Q9BV90 132 aaKnown RBP13.16□□□□□ -0.3
LIMK1-201ENST00000336180 TRAIPQ9BWF2 469 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 TMEM30AQ9NV96 361 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 SNX10Q9Y5X0 201 aa13.16□□□□□ -0.3
LIMK1-201ENST00000336180 SLC10A3P09131 477 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 ITIH2P19823 946 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 SSTR1P30872 391 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 SDC4P31431 198 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 RPL22P35268 128 aaKnown RBP13.15□□□□□ -0.3
LIMK1-201ENST00000336180 CYP4V2Q6ZWL3 525 aaPredicted RBP13.15□□□□□ -0.3
LIMK1-201ENST00000336180 SRRM1Q8IYB3 904 aaKnown RBP13.15□□□□□ -0.3
LIMK1-201ENST00000336180 ALLCQ8N6M5 410 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 ETNK2Q9NVF9 386 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 WHRNQ9P202 907 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 NOD1Q9Y239 953 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 PRKAR2AP13861 404 aaKnown RBP13.15□□□□□ -0.3
LIMK1-201ENST00000336180 MAGEA4P43358 317 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 TAF6P49848 677 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 ZNF143P52747 638 aaPredicted RBP13.15□□□□□ -0.3
LIMK1-201ENST00000336180 CLUL1Q15846 466 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 PTGISQ16647 500 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 DCAF6Q58WW2 860 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 FNBP1LQ5T0N5 605 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 ALKAL1Q6UXT8 129 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 PIGZQ86VD9 579 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 XPNPEP3Q9NQH7 507 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 ASNSD1Q9NWL6 643 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 CNTN3Q9P232 1028 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 NUDT5Q9UKK9 219 aa13.15□□□□□ -0.3
LIMK1-201ENST00000336180 MYBPHLA2RUH7 354 aa13.15□□□□□ -0.31
LIMK1-201ENST00000336180 TRPA1O75762 1119 aa13.15□□□□□ -0.31
LIMK1-201ENST00000336180 MAN1A1P33908 653 aa13.15□□□□□ -0.31
LIMK1-201ENST00000336180 CRYBB1P53674 252 aaPredicted RBP13.15□□□□□ -0.31
LIMK1-201ENST00000336180 OASLQ15646 514 aaKnown RBP13.15□□□□□ -0.31
LIMK1-201ENST00000336180 SLC35F5Q8WV83 523 aa13.15□□□□□ -0.31
LIMK1-201ENST00000336180 MAIP1Q8WWC4 291 aa13.15□□□□□ -0.31
LIMK1-201ENST00000336180 EDEM1Q92611 657 aa13.15□□□□□ -0.31
LIMK1-201ENST00000336180 TMEM209Q96SK2 561 aa13.15□□□□□ -0.31
LIMK1-201ENST00000336180 TBCBQ99426 244 aa13.15□□□□□ -0.31
LIMK1-201ENST00000336180 PRMT1Q99873 361 aaKnown RBP13.15□□□□□ -0.31
LIMK1-201ENST00000336180 GOLGA8RI6L899 631 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 M0QZ92 97 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 SHOX2O60902 331 aaPredicted RBP13.14□□□□□ -0.31
LIMK1-201ENST00000336180 ITGB1P05556 798 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 KRT7P08729 469 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 HDAC4P56524 1084 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 MRPS6P82932 125 aaKnown RBP13.14□□□□□ -0.31
LIMK1-201ENST00000336180 GBE1Q04446 702 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 DPYSL3Q14195 570 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 ZKSCAN8Q15776 578 aaPredicted RBP13.14□□□□□ -0.31
LIMK1-201ENST00000336180 GPRIN1Q7Z2K8 1008 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 CNPY3Q9BT09 278 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 SLC12A6Q9UHW9 1150 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 PIRO00625 290 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 KCNN4O15554 427 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 TMEM63AO94886 807 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 TTC4O95801 387 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 F7P08709 466 aaPredicted RBP13.14□□□□□ -0.31
LIMK1-201ENST00000336180 AMPD1P23109 780 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 SLC6A3Q01959 620 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 SLMAPQ14BN4 828 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 SYPL2Q5VXT5 272 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 EXOC3L1Q86VI1 746 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 GSTCDQ8NEC7 633 aa13.14□□□□□ -0.31
LIMK1-201ENST00000336180 CCDC110Q8TBZ0 833 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms