RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 C9orf43Q8TAL5 461 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 BPIFB1Q8TDL5 484 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ACER1Q8TDN7 264 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 SMPDL3BQ92485 455 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 SMG7Q92540 1137 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 TMEM169Q96HH4 297 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 STRBPQ96SI9 672 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ARRDC1-AS1Q9H2J1 176 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 BICC1Q9H694 974 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ENTPD7Q9NQZ7 604 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 TREX1Q9NSU2 369 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 RBM12Q9NTZ6 932 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 CGNQ9P2M7 1197 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 SLC25A13Q9UJS0 675 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ADAM28Q9UKQ2 775 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 LRFN2Q9ULH4 789 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 FBN3Q75N90 2809 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 LOC101059948A0A1B0GTJ6 334 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ZBTB7CA1YPR0 619 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 C4orf47A7E2U8 309 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 MAPK13O15264 365 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 LIASO43766 372 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 LUC7L3O95232 432 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 FSTL3O95633 263 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 IL18BPO95998 194 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 CISD3P0C7P0 127 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ARAFP10398 606 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ALPPL2P10696 532 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 MCF2P10911 925 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PDHBP11177 359 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 BTF3P20290 206 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ARL2P36404 184 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 USP8P40818 1118 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PNPLA4P41247 253 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 SLC11A1P49279 550 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 SCNN1GP51170 649 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 KIAA1024LP59773 190 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PSPHP78330 225 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 MC2RQ01718 297 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 CCDC15Q0P6D6 951 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 RUNX3Q13761 415 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 MAPRE1Q15691 268 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 NFIL3Q16649 462 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 TSR1Q2NL82 804 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 TWISTNBQ3B726 338 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 FAM78AQ5JUQ0 283 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PPM1LQ5SGD2 360 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 CATSPEREQ5SY80 951 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 RARS2Q5T160 578 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 KRT40Q6A162 431 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 TRIM68Q6AZZ1 485 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 MIS18BP1Q6P0N0 1132 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ARMCX5Q6P1M9 558 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 VSTM1Q6UX27 236 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ARID3BQ8IVW6 561 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ARL14Q8N4G2 192 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 KIAA0895Q8NCT3 520 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 OTUD7AQ8TE49 926 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 NCSTNQ92542 709 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 RABGGTAQ92696 567 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 CAVIN3Q969G5 261 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 RAB7BQ96AH8 199 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 NAF1Q96HR8 494 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 SCLYQ96I15 445 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 NTPCRQ9BSD7 190 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 HDAC8Q9BY41 377 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 RSPH9Q9H1X1 276 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 AGO4Q9HCK5 861 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PTPRHQ9HD43 1115 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 UTP3Q9NQZ2 479 aaKnown RBP eCLIP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PNMA8BQ9ULN7 279 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 NOVA2Q9UNW9 492 aaKnown RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 SALL2Q9Y467 1007 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 DAAM1Q9Y4D1 1078 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 INSL5Q9Y5Q6 135 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 GTF3C3Q9Y5Q9 886 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 DGKBQ9Y6T7 804 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 SETD2Q9BYW2 2564 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 A0A087WZ62 844 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 A0A1B0GUA9 196 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ZBBXA8MT70 800 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 HIP1O00291 1037 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 ZBTB5O15062 677 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 DYNC1LI2O43237 492 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PRAMEF12O95522 483 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 LDOC1O95751 146 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-201ENST00000334389 C9P02748 559 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PYGLP06737 847 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 NR3C2P08235 984 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 INSRRP14616 1297 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 TMOD1P28289 359 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 OPRD1P41143 372 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 CDR1P51861 262 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 CTSCP53634 463 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PPP2CBP62714 309 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PPP2CAP67775 309 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 PPFIA1Q13136 1202 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 RAPGEF1Q13905 1077 aa1.72□□□□□ -2.13
LINC00643-201ENST00000334389 FGFBP1Q14512 234 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms