RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 GTF2H1P32780 548 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 CXCL9Q07325 125 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 SFSWAPQ12872 951 aaKnown RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 LAMC2Q13753 1193 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 ACAD10Q6JQN1 1059 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 ZNF720Q7Z2F6 126 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 FAM83AQ86UY5 434 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 PARD3BQ8TEW8 1205 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 NEUROG2Q9H2A3 272 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 CHORDC1Q9UHD1 332 aaPredicted RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 ATXN2Q99700 1313 aaKnown RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 E2F8A0AVK6 867 aa11.9□□□□□ -0.51
VPS39-201ENST00000318006 ITGA4P13612 1032 aa11.9□□□□□ -0.51
VPS39-201ENST00000318006 TFE3P19532 575 aaPredicted RBP11.9□□□□□ -0.51
VPS39-201ENST00000318006 GRK2P25098 689 aa11.9□□□□□ -0.51
VPS39-201ENST00000318006 HOXA10P31260 410 aaPredicted RBP11.9□□□□□ -0.51
VPS39-201ENST00000318006 RBBP8Q99708 897 aa11.9□□□□□ -0.51
VPS39-201ENST00000318006 FAM32AQ9Y421 112 aaKnown RBP11.9□□□□□ -0.51
VPS39-201ENST00000318006 V9GYQ6 96 aa11.9□□□□□ -0.51
VPS39-201ENST00000318006 FKBP9O95302 570 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 CD4P01730 458 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 ATP6V1C1P21283 382 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 SOX6P35712 828 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 NPTX2P47972 431 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 PTK2BQ14289 1009 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 FKBP9P1Q75LS8 142 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 RRM2BQ7LG56 351 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 SZRD1Q7Z422 152 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 AFG1LQ8WV93 481 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 EPAS1Q99814 870 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 CBWD1Q9BRT8 395 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 DDX4Q9NQI0 724 aaKnown RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 SLC8A2Q9UPR5 921 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 MYRFQ9Y2G1 1151 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 SESN1Q9Y6P5 492 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 AK9Q5TCS8 1911 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 CCL15-CCL14A0A0B4J2E2 113 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 AKAP3O75969 853 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 UNC5CO95185 931 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 C6orf222P0C671 652 aaPredicted RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 CCL15Q16663 113 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 RSBN1Q5VWQ0 802 aaPredicted RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 EFL1Q7Z2Z2 1120 aaKnown RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 RIN3Q8TB24 985 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 OXNAD1Q96HP4 312 aaPredicted RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 FAR2Q96K12 515 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 SMIM31A0A1B0GVY4 71 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 OPLAHO14841 1288 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 RGS5O15539 181 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 TBC1D12O60347 775 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 GSNP06396 782 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 CETPP11597 493 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 PTDSS1P48651 473 aaKnown RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 ARMCX4Q5H9R4 360 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 ERMARDQ5T6L9 678 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 PDPK2PQ6A1A2 396 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 TSHZ1Q6ZSZ6 1077 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 SLC26A11Q86WA9 606 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 MREGQ8N565 214 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 KIAA0895Q8NCT3 520 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 MED15Q96RN5 788 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 IDI2Q9BXS1 227 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 TRIM45Q9H8W5 580 aaPredicted RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 CYLDQ9NQC7 956 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 PDGFRBP09619 1106 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 CYP2C9P11712 490 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 FCGR1AP12314 374 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 HSD17B4P51659 736 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 TMEM62Q0P6H9 643 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 XRCC4Q13426 336 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 CUL2Q13617 745 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 MTFR1Q15390 333 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 GSTA3Q16772 222 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 PLEKHM3Q6ZWE6 761 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 MARK2Q7KZI7 788 aaKnown RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 SYTL5Q8TDW5 730 aaPredicted RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 PDCD2LQ9BRP1 358 aa11.89□□□□□ -0.51
VPS39-201ENST00000318006 GPBP1L1Q9HC44 474 aaPredicted RBP11.89□□□□□ -0.51
VPS39-201ENST00000318006 KNDC1Q76NI1 1749 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 NRXN3Q9Y4C0 1643 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 ABLIM1O14639 778 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 CYTH3O43739 400 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 SUPT20HL2P0C7V6 817 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 RAG1P15918 1043 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 SULT1E1P49888 294 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 TPI1P60174 286 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 KCNJ2P63252 427 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 TRIM25Q14258 630 aaKnown RBP11.88□□□□□ -0.51
VPS39-201ENST00000318006 APOBEC3HQ6NTF7 200 aaKnown RBP11.88□□□□□ -0.51
VPS39-201ENST00000318006 ZFP1Q6P2D0 407 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 ZNF571Q7Z3V5 609 aaPredicted RBP11.88□□□□□ -0.51
VPS39-201ENST00000318006 HDDC2Q7Z4H3 204 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 NANOGNBQ7Z5D8 188 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 C4orf19Q8IY42 314 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 APBB2Q92870 758 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 MAGED4Q96JG8 741 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 RABGEF1Q9UJ41 708 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 OGTO15294 1046 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 GARTP22102 1010 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 250.7 ms