RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 SAR1AQ9NR31 198 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 USP18Q9UMW8 372 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 ADAMTSL1Q8N6G6 1762 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 CLUHO75153 1309 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 SPECC1L-ADORA2AF8WAN1 911 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 LRCH4O75427 683 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 FAM155BO75949 473 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 KRT38O76015 456 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 CELF2O95319 508 aaKnown RBP10.96□□□□□ -0.66
COL3A1-202ENST00000317840 GCAP28676 217 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 OASLQ15646 514 aaKnown RBP10.96□□□□□ -0.66
COL3A1-202ENST00000317840 RELL1Q8IUW5 271 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 NDUFAF2Q8N183 169 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 ANKLE1Q8NAG6 615 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 SPDYE1Q8NFV5 336 aaPredicted RBP10.96□□□□□ -0.66
COL3A1-202ENST00000317840 PTPRN2Q92932 1015 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 SRPK1Q96SB4 655 aaKnown RBP10.96□□□□□ -0.66
COL3A1-202ENST00000317840 CADM1Q9BY67 442 aaKnown RBP10.96□□□□□ -0.66
COL3A1-202ENST00000317840 SHCBP1LQ9BZQ2 653 aa10.96□□□□□ -0.66
COL3A1-202ENST00000317840 TYROBPO43914 113 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 GJB1P08034 283 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 PDE1BQ01064 536 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 DPYSL3Q14195 570 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 CFAP157Q5JU67 520 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 SCARA3Q6AZY7 606 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 C4orf50Q6ZRC1 276 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 C15orf39Q6ZRI6 1047 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 BRSK2Q8IWQ3 736 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 CEP120Q8N960 986 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 SCG3Q8WXD2 468 aaKnown RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 E2F7Q96AV8 911 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 CORO1CQ9ULV4 474 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 DPPA5A6NC42 116 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 WFS1O76024 890 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 SNRPAP09012 282 aaKnown RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 UBTFL6P0CB48 400 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 T-ENOLP0DO92 83 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 GM2AP17900 193 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 EIF4BP23588 611 aaKnown RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 IL1R2P27930 398 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 AP3M2P53677 418 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 IRX1P78414 480 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 CDK16Q00536 496 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 FSTL1Q12841 308 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 PLEKHG4Q58EX7 1191 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 PRPF39Q86UA1 669 aaKnown RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 ALYREFQ86V81 257 aaKnown RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 WDR49Q8IV35 697 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 SLC25A41Q8N5S1 370 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 DEPDC1BQ8WUY9 529 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 OXNAD1Q96HP4 312 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 FAXDC2Q96IV6 333 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 ZNF518BQ9C0D4 1074 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 RSAD1Q9HA92 442 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 NMRK1Q9NWW6 199 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 CPSF2Q9P2I0 782 aaKnown RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 OGTO15294 1046 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 MAGEB2O15479 319 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 DYNC1LI2O43237 492 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 ATP6V1C1P21283 382 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 RFC5P40937 340 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 RTP1P59025 263 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 ZNF280AP59817 542 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 THEMIS2Q5TEJ8 643 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 AP1ARQ63HQ0 302 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 ADGRD1Q6QNK2 874 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 ABHD15Q6UXT9 468 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 ZCCHC23Q6ZST2 131 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 BBS12Q6ZW61 710 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 TRIM42Q8IWZ5 723 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 C7orf31Q8N865 590 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 TEKT4Q8WW24 435 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 APOPT1Q96IL0 206 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 NMUR2Q9GZQ4 415 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 CYP4F11Q9HBI6 524 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 ABT1Q9ULW3 272 aaKnown RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 MAGED2Q9UNF1 606 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-202ENST00000317840 SNCAIPQ9Y6H5 919 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 UTRNP46939 3433 aa10.95□□□□□ -0.66
COL3A1-202ENST00000317840 E2F8A0AVK6 867 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 FZD9O00144 591 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 GSC2O15499 205 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 ADCY3O60266 1144 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 SMNDC1O75940 238 aaKnown RBP eCLIP10.94□□□□□ -0.66
COL3A1-202ENST00000317840 ZCCHC18P0CG32 403 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 ATP4AP20648 1035 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 CYP2B6P20813 491 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 EFNA5P52803 228 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 AQP5P55064 265 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 ZNF252P-AS1Q0IIN9 211 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 CAPSQ13938 189 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 TTLL4Q14679 1199 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 SURF1Q15526 300 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 DRICH1Q6PGQ1 229 aaPredicted RBP10.94□□□□□ -0.66
COL3A1-202ENST00000317840 FASTKD5Q7L8L6 764 aaKnown RBP10.94□□□□□ -0.66
COL3A1-202ENST00000317840 SLC26A11Q86WA9 606 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.94□□□□□ -0.66
COL3A1-202ENST00000317840 SLC35B2Q8TB61 432 aa10.94□□□□□ -0.66
COL3A1-202ENST00000317840 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.94□□□□□ -0.66
COL3A1-202ENST00000317840 SYNJ2BP-COX16A0A087WUM0 186 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms