RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 FRMD8P1Q9BZ68 369 aaPredicted RBP19.21■□□□□ 0.67
CCDC43-201ENST00000315286 GIT1Q9Y2X7 761 aa19.21■□□□□ 0.67
CCDC43-201ENST00000315286 CLDN5O00501 218 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 ACSL3O95573 720 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 IFNB1P01574 187 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 PTPN1P18031 435 aaKnown RBP19.2■□□□□ 0.66
CCDC43-201ENST00000315286 SCNN1GP51170 649 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 HDAC4P56524 1084 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 MAGOHP61326 146 aaKnown RBP19.2■□□□□ 0.66
CCDC43-201ENST00000315286 DPYSL3Q14195 570 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 BOLA3Q53S33 107 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 KIAA0319Q5VV43 1072 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 SLC26A9Q7LBE3 791 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 HSFY1Q96LI6 401 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 CYLDQ9NQC7 956 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 TRMT13Q9NUP7 481 aaKnown RBP19.2■□□□□ 0.66
CCDC43-201ENST00000315286 GPATCH2LQ9NWQ4 482 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 SMIM23A6NLE4 172 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 APOC4-APOC2K7ER74 178 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 APOC2P02655 101 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 FAM163BP0C2L3 166 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 ACADSBP45954 432 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 GDF10P55107 478 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 GUCY1A3Q02108 690 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 ZSCAN26Q16670 478 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 KYNUQ16719 465 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 ZC3H12AQ5D1E8 599 aaKnown RBP19.2■□□□□ 0.66
CCDC43-201ENST00000315286 PAQR9Q6ZVX9 377 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 PIGZQ86VD9 579 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 PCSK9Q8NBP7 692 aaKnown RBP19.2■□□□□ 0.66
CCDC43-201ENST00000315286 C3orf58Q8NDZ4 430 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 EPS8L3Q8TE67 593 aaKnown RBP19.2■□□□□ 0.66
CCDC43-201ENST00000315286 TLCD1Q96CP7 247 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 TMEM109Q9BVC6 243 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 MAK16Q9BXY0 300 aaKnown RBP19.2■□□□□ 0.66
CCDC43-201ENST00000315286 DUSP16Q9BY84 665 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 ADAM33Q9BZ11 813 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 PCDH9Q9HC56 1237 aa19.2■□□□□ 0.66
CCDC43-201ENST00000315286 TPX2Q9ULW0 747 aaKnown RBP19.2■□□□□ 0.66
CCDC43-201ENST00000315286 XPO1O14980 1071 aaKnown RBP19.19■□□□□ 0.66
CCDC43-201ENST00000315286 TTC4O95801 387 aa19.19■□□□□ 0.66
CCDC43-201ENST00000315286 IBSPP21815 317 aaPredicted RBP19.19■□□□□ 0.66
CCDC43-201ENST00000315286 IL4RP24394 825 aa19.19■□□□□ 0.66
CCDC43-201ENST00000315286 ITGA7Q13683 1181 aa19.19■□□□□ 0.66
CCDC43-201ENST00000315286 LPIN1Q14693 890 aa19.19■□□□□ 0.66
CCDC43-201ENST00000315286 PKNOX2Q96KN3 472 aa19.19■□□□□ 0.66
CCDC43-201ENST00000315286 PAAF1Q9BRP4 392 aa19.19■□□□□ 0.66
CCDC43-201ENST00000315286 C11orf84Q9BUA3 381 aaPredicted RBP19.19■□□□□ 0.66
CCDC43-201ENST00000315286 DDX43Q9NXZ2 648 aaKnown RBP19.19■□□□□ 0.66
CCDC43-201ENST00000315286 CASTOR2A6NHX0 329 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 BEST1O76090 585 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 SCNN1AP37088 669 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 PTPN9P43378 593 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 PPARDQ03181 441 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 KRT81Q14533 505 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 CA9Q16790 459 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 NPNTQ6UXI9 565 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 ZCCHC9Q8N567 271 aaKnown RBP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 RNF169Q8NCN4 708 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 TEKT4Q8WW24 435 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 NDRG1Q92597 394 aaKnown RBP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 PGM2Q96G03 612 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 CAPNS2Q96L46 248 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 RNF157Q96PX1 679 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 SNRNP25Q9BV90 132 aaKnown RBP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 NINJ2Q9NZG7 142 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 SRRDQ9UH36 339 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 TIMM13Q9Y5L4 95 aaPredicted RBP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 A6NNZ2 444 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 EIF3HO15372 352 aaKnown RBP eCLIP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 ZNF623O75123 536 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 SLCO1A2P46721 670 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 ATXN1P54253 815 aaKnown RBP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 EIF3EP60228 445 aaKnown RBP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 DSC3Q14574 896 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 PDK2Q15119 407 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 TUBB8Q3ZCM7 444 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 MDH1BQ5I0G3 518 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 C6orf118Q5T5N4 469 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 ARCQ7LC44 396 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 MAP7D3Q8IWC1 876 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 UNC45BQ8IWX7 931 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 ARFGAP2Q8N6H7 521 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 SPATA18Q8TC71 538 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 CENPIQ92674 756 aaPredicted RBP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 PCDH18Q9HCL0 1135 aa19.18■□□□□ 0.66
CCDC43-201ENST00000315286 DDX20Q9UHI6 824 aaKnown RBP19.18■□□□□ 0.66
CCDC43-201ENST00000315286 THSD7BQ9C0I4 1608 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 NPR3P17342 541 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 DESP17661 470 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 MDH1P40925 334 aaKnown RBP19.17■□□□□ 0.66
CCDC43-201ENST00000315286 PPP2R2AP63151 447 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 PTK7Q13308 1070 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 TRIM71Q2Q1W2 868 aaKnown RBP19.17■□□□□ 0.66
CCDC43-201ENST00000315286 MAP3K21Q5TCX8 1036 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 DSTYKQ6XUX3 929 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 RSAD2Q8WXG1 361 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 RBM15Q96T37 977 aaKnown RBP eCLIP19.17■□□□□ 0.66
CCDC43-201ENST00000315286 TBCBQ99426 244 aa19.17■□□□□ 0.66
CCDC43-201ENST00000315286 CRTAC1Q9NQ79 661 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms