RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CEP63Q96MT8 703 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 CCSER2Q9H7U1 834 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 IL37Q9NZH6 218 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 CHORDC1Q9UHD1 332 aaPredicted RBP17.26■□□□□ 0.35
LSM1-201ENST00000311351 FBXO4Q9UKT5 387 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 COQ4Q9Y3A0 265 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 KIAA1549LQ6ZVL6 1849 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 PTPRZ1P23471 2315 aaPredicted RBP17.25■□□□□ 0.35
LSM1-201ENST00000311351 WDR87Q6ZQQ6 2873 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 HHLA1C9JL84 531 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 MBL2P11226 248 aaPredicted RBP17.25■□□□□ 0.35
LSM1-201ENST00000311351 FMO5P49326 533 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 PGFP49763 221 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 SLC7A9P82251 487 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 LRMPQ12912 555 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 PAK1Q13153 545 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 CCINQ13939 588 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 LRRC32Q14392 662 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 EML3Q32P44 896 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 PPP1R26Q5T8A7 1209 aaPredicted RBP17.25■□□□□ 0.35
LSM1-201ENST00000311351 FILIP1Q7Z7B0 1213 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 CPA6Q8N4T0 437 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 SLC4A11Q8NBS3 891 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 OVCA2Q8WZ82 227 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 LINC00597Q9H2U6 94 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 ECT2Q9H8V3 914 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 GPR179Q6PRD1 2367 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 MYOFQ9NZM1 2061 aa17.25■□□□□ 0.35
LSM1-201ENST00000311351 EP300Q09472 2414 aaPredicted RBP17.25■□□□□ 0.35
LSM1-201ENST00000311351 BICDL2A1A5D9 508 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 FAM92AA1XBS5 289 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 CYP26A1O43174 497 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 COCHO43405 550 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 ZDHHC11BP0C7U3 371 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 GJA4P35212 333 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 RAD23BP54727 409 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 SATB1Q01826 763 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 CUL2Q13617 745 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 FSTL4Q6MZW2 842 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 ATP2A3Q93084 1043 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 FAXDC2Q96IV6 333 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 IER2Q9BTL4 223 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 METTL14Q9HCE5 456 aaKnown RBP17.24■□□□□ 0.35
LSM1-201ENST00000311351 CFAP97Q9P2B7 532 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 OTOGLQ3ZCN5 2332 aa17.24■□□□□ 0.35
LSM1-201ENST00000311351 TDGF1P13385 188 aa17.23■□□□□ 0.35
LSM1-201ENST00000311351 ACO1P21399 889 aaKnown RBP17.23■□□□□ 0.35
LSM1-201ENST00000311351 ZNF528Q3MIS6 628 aa17.23■□□□□ 0.35
LSM1-201ENST00000311351 HECTD3Q5T447 861 aa17.23■□□□□ 0.35
LSM1-201ENST00000311351 ZC3H14Q6PJT7 736 aaKnown RBP17.23■□□□□ 0.35
LSM1-201ENST00000311351 TRIML1Q8N9V2 468 aa17.23■□□□□ 0.35
LSM1-201ENST00000311351 ZFRQ96KR1 1074 aaKnown RBP17.23■□□□□ 0.35
LSM1-201ENST00000311351 HEXIM2Q96MH2 286 aaKnown RBP17.23■□□□□ 0.35
LSM1-201ENST00000311351 FBRSL1Q9HCM7 1045 aaKnown RBP17.23■□□□□ 0.35
LSM1-201ENST00000311351 C2orf42Q9NWW7 574 aa17.23■□□□□ 0.35
LSM1-201ENST00000311351 COMMD8Q9NX08 183 aa17.23■□□□□ 0.35
LSM1-201ENST00000311351 KIAA1468Q9P260 1216 aa17.23■□□□□ 0.35
LSM1-201ENST00000311351 EGFP01133 1207 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 CCR3P51677 355 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 TMEM196Q5HYL7 178 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 DGKKQ5KSL6 1271 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 SNX30Q5VWJ9 437 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 PKN3Q6P5Z2 889 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 FOXR2Q6PJQ5 311 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 TTC39CQ8N584 583 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 UBR7Q8N806 425 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 TMEM176AQ96HP8 235 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 DUSP16Q9BY84 665 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 FBXO44Q9H4M3 255 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 OSER1Q9NX31 292 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 CFAP54Q96N23 3096 aa17.22■□□□□ 0.35
LSM1-201ENST00000311351 TRDMT1O14717 391 aaKnown RBP17.21■□□□□ 0.35
LSM1-201ENST00000311351 TLR5O60602 858 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 NFATC1O95644 943 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 CYP17A1P05093 508 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 IRF1P10914 325 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 HOXC13P31276 330 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 TUBP50607 506 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 TRIM59Q8IWR1 403 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 SPEM1Q8N4L4 309 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 NELL1Q92832 810 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 KAT5Q92993 513 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 WBP2Q969T9 261 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 SRRTQ9BXP5 876 aaKnown RBP17.21■□□□□ 0.35
LSM1-201ENST00000311351 DNAI2Q9GZS0 605 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 CLSTN2Q9H4D0 955 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 NMUR1Q9HB89 426 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 PNPLA8Q9NP80 782 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 TLR8Q9NR97 1041 aaKnown RBP17.21■□□□□ 0.35
LSM1-201ENST00000311351 SCML2Q9UQR0 700 aa17.21■□□□□ 0.35
LSM1-201ENST00000311351 A0A1W2PQH9 124 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 TBX18O95935 607 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 CXCL12P48061 93 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 GALK1P51570 392 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 KIF11P52732 1056 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 GRSF1Q12849 480 aaKnown RBP eCLIP17.2■□□□□ 0.34
LSM1-201ENST00000311351 GOLGA7BQ2TAP0 167 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 GAB4Q2WGN9 574 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 ARHGAP17Q68EM7 881 aa17.2■□□□□ 0.34
LSM1-201ENST00000311351 TTC30AQ86WT1 665 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms