RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 KRT33BQ14525 404 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 TTC23LQ6PF05 361 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 PABPC5Q96DU9 382 aaKnown RBP13.27□□□□□ -0.28
COL3A1-201ENST00000304636 CNPY3Q9BT09 278 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 PIN4Q9Y237 131 aaKnown RBP13.27□□□□□ -0.28
COL3A1-201ENST00000304636 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.27□□□□□ -0.28
COL3A1-201ENST00000304636 KIF20BQ96Q89 1820 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 GOLGA8TH3BQL2 631 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 KCNQ2O43526 872 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 CHRNB3Q05901 458 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 CCDC153Q494R4 210 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 TRAF7Q6Q0C0 670 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 TUBGCP3Q96CW5 907 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 RMND5BQ96G75 393 aaPredicted RBP13.27□□□□□ -0.28
COL3A1-201ENST00000304636 SYBUQ9NX95 663 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 NCKIPSDQ9NZQ3 722 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 LMCD1Q9NZU5 365 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 DIP2AQ14689 1571 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 OGTO15294 1046 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 ITGB3P05106 788 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 SV2CQ496J9 727 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 SV2AQ7L0J3 742 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 STRA8Q7Z7C7 330 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 SLC10A4Q96EP9 437 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 AGBL1Q96MI9 1066 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 BRD8Q9H0E9 1235 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 EXOSC4Q9NPD3 245 aaKnown RBP13.27□□□□□ -0.29
COL3A1-201ENST00000304636 HEATR9A2RTY3 570 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 EVPLLA8MZ36 301 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 GAS2O43903 313 aaKnown RBP13.27□□□□□ -0.29
COL3A1-201ENST00000304636 MPOP05164 745 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 HNRNPH3P31942 346 aaKnown RBP13.27□□□□□ -0.29
COL3A1-201ENST00000304636 PTPN7P35236 360 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 KCNJ2P63252 427 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 MGAT5Q09328 741 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 ARHGEF19Q8IW93 802 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 URGCPQ8TCY9 931 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 NEUROG2Q9H2A3 272 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 EPS8L2Q9H6S3 715 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 NRDE2Q9H7Z3 1164 aa13.27□□□□□ -0.29
COL3A1-201ENST00000304636 CORO1CQ9ULV4 474 aaPredicted RBP13.27□□□□□ -0.29
COL3A1-201ENST00000304636 RPL26L1Q9UNX3 145 aaKnown RBP13.27□□□□□ -0.29
COL3A1-201ENST00000304636 GRIK1P39086 918 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 NAMPTP43490 491 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 GEMP55040 296 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 PSMC6P62333 389 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 PRR5LQ6MZQ0 368 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 SPATA2LQ8IUW3 424 aaPredicted RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 ZNF398Q8TD17 642 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 KLHL25Q9H0H3 589 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 AAR2Q9Y312 384 aaKnown RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 NWD1Q149M9 1564 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 C1orf167Q5SNV9 1468 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 SSTR1P30872 391 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 AVPR1AP37288 418 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 RGS2P41220 211 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 PTDSS1P48651 473 aaKnown RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 N4BP2L1Q5TBK1 243 aaPredicted RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 FAM151AQ8WW52 585 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 MAP3K20Q9NYL2 800 aaKnown RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 RARBP10826 455 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 ADRA1DP25100 572 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 XRCC4Q13426 336 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 TCHHL1Q5QJ38 904 aaPredicted RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 SEPT12Q8IYM1 358 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 VTI1BQ9UEU0 232 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 PKP3Q9Y446 797 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 OPLAHO14841 1288 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 ICAM1P05362 532 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 ARP10275 920 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 KLRK1P26718 216 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 GNL1P36915 607 aaPredicted RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 PBX1P40424 430 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 RGS4P49798 205 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 GCNT1Q02742 428 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 FUT11Q495W5 492 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 NET1Q7Z628 596 aaPredicted RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 TMEM139Q8IV31 216 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 OR6Y1Q8NGX8 325 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 ETNPPLQ8TBG4 499 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 ZNF333Q96JL9 665 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 TAAR1Q96RJ0 339 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 KCTD10Q9H3F6 313 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 TMEM161AQ9NX61 479 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 MPP6Q9NZW5 540 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 ARMCX1Q9P291 453 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 SLC30A1Q9Y6M5 507 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 C5orf58C9J3I9 102 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 C19orf81C9J6K1 198 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 RPA3P35244 121 aaPredicted RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 POU4F1Q01851 419 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 CSTF3Q12996 717 aaKnown RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 FAM172AQ8WUF8 416 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 CASP10Q92851 521 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 GLMNQ92990 594 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 MTMR12Q9C0I1 747 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 KIAA1683Q9H0B3 1180 aa13.26□□□□□ -0.29
COL3A1-201ENST00000304636 IARS2Q9NSE4 1012 aaKnown RBP13.26□□□□□ -0.29
COL3A1-201ENST00000304636 GIMAP4Q9NUV9 329 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms