RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MAGEC3Q8TD91 643 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 PBXIP1Q96AQ6 731 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 DDX28Q9NUL7 540 aaKnown RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 TISP43B9A030 160 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 APOL1O14791 398 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 YY1P25490 414 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 GTF2H1P32780 548 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 GSCP56915 257 aaPredicted RBP15.93■□□□□ 0.14
SHH-201ENST00000297261 PLOD1Q02809 727 aaPredicted RBP15.93■□□□□ 0.14
SHH-201ENST00000297261 DUOXA2Q1HG44 320 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 SLC45A4Q5BKX6 768 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 SPDYCQ5MJ68 293 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 FAM13CQ8NE31 585 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 ACTL9Q8TC94 416 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 MYL3P08590 195 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 ZSCAN5DPP0CG00 497 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 TPP2P29144 1249 aaPredicted RBP15.93■□□□□ 0.14
SHH-201ENST00000297261 SERPINB9P50453 376 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 GPC3P51654 580 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 MXD4Q14582 209 aaPredicted RBP15.93■□□□□ 0.14
SHH-201ENST00000297261 LY6KQ17RY6 165 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 RNF43Q68DV7 783 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 GPAT2Q6NUI2 795 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 C16orf89Q6UX73 402 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 RNF148Q8N7C7 305 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 OXNAD1Q96HP4 312 aaPredicted RBP15.93■□□□□ 0.14
SHH-201ENST00000297261 PALMDQ9NP74 551 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 SAR1AQ9NR31 198 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 TUBGCP6Q96RT7 1819 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 STRNO43815 780 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 PRKCIP41743 596 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 NOVP48745 357 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 DAB2P98082 770 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 SEZ6Q53EL9 994 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 PARK7Q99497 189 aaKnown RBP15.93■□□□□ 0.14
SHH-201ENST00000297261 GCOM2Q9BZD3 368 aaPredicted RBP15.93■□□□□ 0.14
SHH-201ENST00000297261 PKD2L2Q9NZM6 624 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 PCDHA3Q9Y5H8 950 aa15.93■□□□□ 0.14
SHH-201ENST00000297261 FZD9O00144 591 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 PSMC3P17980 439 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 HUNKP57058 714 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 TAF1CQ15572 869 aaPredicted RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 CBWD6Q4V339 395 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CBWD3Q5JTY5 395 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CBWD5Q5RIA9 395 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 TTC33Q6PID6 262 aaPredicted RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 DLK2Q6UY11 383 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CDR2LQ86X02 465 aaPredicted RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 DDHD1Q8NEL9 900 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 GCNAQ96QF7 691 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 GANQ9H2C0 597 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 MYH6P13533 1939 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 E9PBE3 544 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 KLHL41O60662 606 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 RGS7P49802 495 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 SNRPFP62306 86 aaKnown RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 C16orf72Q14CZ0 275 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 HGSNATQ68CP4 663 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 IRF2BP2Q7Z5L9 587 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 GDPD5Q8WTR4 605 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 KAT5Q92993 513 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 DCUN1D5Q9BTE7 237 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 FAM192AQ9GZU8 254 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.92■□□□□ 0.14
SHH-201ENST00000297261 PAK5Q9P286 719 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 ZNF212Q9UDV6 495 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 RGS17Q9UGC6 210 aaPredicted RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 SOX13Q9UN79 622 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 PROSCO94903 275 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CYP2C8P10632 490 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CHKAP35790 457 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 TREML2Q5T2D2 321 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 TMTC4Q5T4D3 741 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 PRUNE1Q86TP1 453 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CCDC60Q8IWA6 550 aaPredicted RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 NUP93Q8N1F7 819 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 SIX6OS1Q8N1H7 587 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 OR6J1Q8NGC5 347 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 NCLNQ969V3 563 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CATSPER2Q96P56 530 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 ERVK-5Q9HDB9 667 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 TOPORSQ9NS56 1045 aaPredicted RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 BTBD7Q9P203 1132 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 STARD13Q9Y3M8 1113 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CDY2AQ9Y6F7 541 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CDY1Q9Y6F8 540 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 PEX10O60683 326 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 DRG2P55039 364 aaKnown RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 RPL10AP62906 217 aaKnown RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 BLMHQ13867 455 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 COBLL1Q53SF7 1204 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 HACE1Q8IYU2 909 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 ZSWIM2Q8NEG5 633 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 HES6Q96HZ4 224 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 CEP19Q96LK0 163 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 PRPF18Q99633 342 aaKnown RBP15.92■□□□□ 0.14
SHH-201ENST00000297261 NACA2Q9H009 215 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 KCTD10Q9H3F6 313 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 MROH8Q9H579 483 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 IL1RL2Q9HB29 575 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms