RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TBC1D1Q86TI0 1168 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 SUGP1Q8IWZ8 645 aaKnown RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 C7orf31Q8N865 590 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 OR6J1Q8NGC5 347 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 FAM172AQ8WUF8 416 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 C12orf65Q9H3J6 166 aaKnown RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 DPEP3Q9H4B8 488 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 ARL2BPQ9Y2Y0 163 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 RBM47A0AV96 593 aaKnown RBP19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 MGAT5Q09328 741 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 NOMO1Q15155 1222 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 KYAT1Q16773 422 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 EFHC2Q5JST6 749 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 PDIK1LQ8N165 341 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 CCDC33Q8N5R6 958 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 FITM2Q8N6M3 262 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 OR6B3Q8NGW1 331 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 ZC3H15Q8WU90 426 aaKnown RBP19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 EMID1Q96A84 441 aaPredicted RBP19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 PAFAH2Q99487 392 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 OSMRQ99650 979 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 MAGEB5Q9BZ81 275 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 PLXNB2O15031 1838 aa19.16■□□□□ 0.66
SHKBP1-201ENST00000291842 CCL15-CCL14A0A0B4J2E2 113 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 PRPF4O43172 522 aaKnown RBP eCLIP19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 GABBR2O75899 941 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 ENDOD1O94919 500 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 IL4RP24394 825 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 AKAP5P24588 427 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 PHBP35232 272 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 ELK3P41970 407 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 MTFR1Q15390 333 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 CCL15Q16663 113 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 FAXCQ5TGI0 409 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 OLFML1Q6UWY5 402 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 CATSPER4Q7RTX7 472 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 CCDC63Q8NA47 563 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 CLEC4CQ8WTT0 213 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 RNF157Q96PX1 679 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 PRKAG3Q9UGI9 489 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 SLC24A2Q9UI40 661 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 GJD2Q9UKL4 321 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 ZMYND8Q9ULU4 1186 aaPredicted RBP19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 NDC80O14777 642 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 PDGFRBP09619 1106 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 RDXP35241 583 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 PPP6R3Q5H9R7 873 aaPredicted RBP19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 PARP9Q8IXQ6 854 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 MS4A4AQ96JQ5 239 aa19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 NXF3Q9H4D5 531 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-201ENST00000291842 KCNN4O15554 427 aa19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 ATXN1P54253 815 aaKnown RBP19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 SPARCL1Q14515 664 aa19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 PRAMEF19Q5SWL8 479 aa19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 GPR142Q7Z601 462 aa19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 PLD5Q8N7P1 536 aa19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 KHSRPQ92945 711 aaKnown RBP eCLIP19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 ECT2Q9H8V3 914 aa19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 SPON1Q9HCB6 807 aa19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 KIAA1257Q9ULG3 409 aa19.14■□□□□ 0.66
SHKBP1-201ENST00000291842 WDR91A4D1P6 747 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 E7ESA3 106 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 PAPSS1O43252 624 aaPredicted RBP19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 TYROBPO43914 113 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 GSTA1P08263 222 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 RNASELQ05823 741 aaKnown RBP19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 DGKDQ16760 1214 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 DUSP28Q4G0W2 176 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 FAF2Q96CS3 445 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 MAML3Q96JK9 1138 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 ADAMTS10Q9H324 1103 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 ACSS3Q9H6R3 686 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 RAB6BQ9NRW1 208 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 KLK14Q9P0G3 267 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 PHTF1Q9UMS5 762 aa19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 SMG5Q9UPR3 1016 aaKnown RBP19.14■□□□□ 0.65
SHKBP1-201ENST00000291842 STAU1O95793 577 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 ADORA2BP29275 332 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 SDC4P31431 198 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 ELF3P78545 371 aaPredicted RBP19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 SLC6A3Q01959 620 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 ACVR2BQ13705 512 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 TFDP2Q14188 446 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 PKDCCQ504Y2 493 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 HHATQ5VTY9 493 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 LVRNQ6Q4G3 990 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 SESTD1Q86VW0 696 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 ECHDC2Q86YB7 292 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 PQLC3Q8N755 202 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 BRI3BPQ8WY22 251 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 SNX27Q96L92 541 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 SNRNP25Q9BV90 132 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 KLHL14Q9P2G3 628 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 CLEC11AQ9Y240 323 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 FGFR1P11362 822 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 CCDC130P13994 396 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 RBL1P28749 1068 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 STIP1P31948 543 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 MSH2P43246 934 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 NCALDP61601 193 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms