RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 ZNF486Q96H40 463 aaPredicted RBP9.58□□□□□ -0.88
PDGFC-201ENST00000274071 ACAP3Q96P50 834 aa9.58□□□□□ -0.88
PDGFC-201ENST00000274071 WRNIP1Q96S55 665 aa9.58□□□□□ -0.88
PDGFC-201ENST00000274071 C17orf80Q9BSJ5 609 aa9.58□□□□□ -0.88
PDGFC-201ENST00000274071 HOXD1Q9GZZ0 328 aa9.58□□□□□ -0.88
PDGFC-201ENST00000274071 C12orf10Q9HB07 376 aa9.58□□□□□ -0.88
PDGFC-201ENST00000274071 ANLNQ9NQW6 1124 aa9.58□□□□□ -0.88
PDGFC-201ENST00000274071 SPEF1Q9Y4P9 236 aa9.58□□□□□ -0.88
PDGFC-201ENST00000274071 ZNF701M0R085 212 aaPredicted RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 KCNQ2O43526 872 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ALX3O95076 343 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 H6PDO95479 791 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ADORA1P30542 326 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CCDC14Q49A88 953 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 AGAP7PQ5VUJ5 663 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 FRA10AC1Q70Z53 315 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SETD3Q86TU7 594 aaPredicted RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ZNF598Q86UK7 904 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 IGFN1Q86VF2 1251 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ZNF34Q8IZ26 560 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 PQLC1Q8N2U9 271 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 GUF1Q8N442 669 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 RFFLQ8WZ73 363 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 PSKH2Q96QS6 385 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 COQ7Q99807 217 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 RIC8BQ9NVN3 520 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 PPARGC1AQ9UBK2 798 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ASIC3Q9UHC3 531 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 RNF11Q9Y3C5 154 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ALG6Q9Y672 507 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CASZ1Q86V15 1759 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SLIT2O94813 1529 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ILVBLA1L0T0 632 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SCO2O43819 266 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CSDE1O75534 798 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 B3GALNT1O75752 331 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 MYCP01106 439 aaPredicted RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ARL1P40616 181 aaPredicted RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 KRT17Q04695 432 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CDK18Q07002 472 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SF3B3Q15393 1217 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SIX1Q15475 284 aaPredicted RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 STK11Q15831 433 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SLC15A2Q16348 729 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 FAM98CQ17RN3 349 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SMU1Q2TAY7 513 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 METTL24Q5JXM2 366 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 PPM1LQ5SGD2 360 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ANKRD26P1Q6NSI1 321 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CYP4F22Q6NT55 531 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 DPY19L2P1Q6NXN4 242 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 PGM2L1Q6PCE3 622 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 LYSMD3Q7Z3D4 306 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 GPR141Q7Z602 305 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 RTKN2Q8IZC4 609 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 TMA16Q96EY4 203 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ALPK1Q96QP1 1244 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 VPS11Q9H270 941 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 RPF2Q9H7B2 306 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CNNM1Q9NRU3 951 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SENP1Q9P0U3 644 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 HMGXB4Q9UGU5 601 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 BCAP29Q9UHQ4 241 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 DSEQ9UL01 958 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 POMPQ9Y244 141 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ATP8B3O60423 1300 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 LINC00854A0A1B0GVQ3 168 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 PVALEFA0A1B0GWK0 134 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 PRR5-ARHGAP8B1AHC4 643 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ENPP3O14638 875 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 TNPO2O14787 897 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 KCNJ13O60928 360 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CSPG5O95196 566 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 UCHL3P15374 230 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 NELFEP18615 380 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 SLC9A1P19634 815 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ARHGAP8P85298 464 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 TFAP4Q01664 338 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 NIPAL4Q0D2K0 466 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ITPK1Q13572 414 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 LRRC41Q15345 812 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 TMC5Q6UXY8 1006 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 PRR23CQ6ZRP0 262 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 DCP2Q8IU60 420 aaKnown RBP9.57□□□□□ -0.88
PDGFC-201ENST00000274071 TICAM1Q8IUC6 712 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 KIAA2013Q8IYS2 634 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 FEM1CQ96JP0 617 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CIB1Q99828 191 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 NUDT12Q9BQG2 462 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CCDC106Q9BWC9 280 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 WNT8AQ9H1J5 351 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 CAAP1Q9H8G2 361 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 COMMD8Q9NX08 183 aa9.57□□□□□ -0.88
PDGFC-201ENST00000274071 ANKRD36CQ5JPF3 1778 aa9.56□□□□□ -0.88
PDGFC-201ENST00000274071 H3BMQ9 156 aa9.56□□□□□ -0.88
PDGFC-201ENST00000274071 TRAF5O00463 557 aa9.56□□□□□ -0.88
PDGFC-201ENST00000274071 FKBP9O95302 570 aa9.56□□□□□ -0.88
PDGFC-201ENST00000274071 C8BP07358 591 aa9.56□□□□□ -0.88
PDGFC-201ENST00000274071 ATP6V0D1P61421 351 aa9.56□□□□□ -0.88
PDGFC-201ENST00000274071 FKBP3Q00688 224 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms