RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 E2F8A0AVK6 867 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 AKAP10O43572 662 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 MYO1HQ8N1T3 1032 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 ACTRT1Q8TDG2 376 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 VPS50Q96JG6 964 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 MRPL9Q9BYD2 267 aaKnown RBP19.79■□□□□ 0.76
UPF1-201ENST00000262803 DDIT4Q9NX09 232 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 DYRK1BQ9Y463 629 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 MANSC4A6NHS7 340 aaPredicted RBP19.79■□□□□ 0.76
UPF1-201ENST00000262803 MZF1P28698 734 aaPredicted RBP19.79■□□□□ 0.76
UPF1-201ENST00000262803 ADGRA1Q86SQ6 560 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 ENTPD7Q9NQZ7 604 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 SLC39A10Q9ULF5 831 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 DIP2CQ9Y2E4 1556 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 TRIM49D1C9J1S8 452 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 LZTS3O60299 673 aaPredicted RBP19.79■□□□□ 0.76
UPF1-201ENST00000262803 CTCFP49711 727 aaPredicted RBP19.79■□□□□ 0.76
UPF1-201ENST00000262803 MROH9Q5TGP6 573 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 PRAMEF18Q5VWM3 479 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 ZDHHC17Q8IUH5 632 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 OTULINQ96BN8 352 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 MAN1C1Q9NR34 630 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 ITGA11Q9UKX5 1188 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 AIM2O14862 343 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 GZMAP12544 262 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 NFIAQ12857 509 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 ZNF571Q7Z3V5 609 aaPredicted RBP19.79■□□□□ 0.76
UPF1-201ENST00000262803 PLD3Q8IV08 490 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 FBXL16Q8N461 479 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 ACER1Q8TDN7 264 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 ATP8B4Q8TF62 1192 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 ADGRE3Q9BY15 652 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 SCUBE2Q9NQ36 999 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 TBC1D13Q9NVG8 400 aa19.79■□□□□ 0.76
UPF1-201ENST00000262803 M0QYT0 321 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 AKAP3O75969 853 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 CYP11B1P15538 503 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 CAMK2GQ13555 558 aaPredicted RBP19.78■□□□□ 0.76
UPF1-201ENST00000262803 C2CD6Q53TS8 623 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 CDR2LQ86X02 465 aaPredicted RBP19.78■□□□□ 0.76
UPF1-201ENST00000262803 LNPEPQ9UIQ6 1025 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 PIK3C2BO00750 1634 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 IQGAP1P46940 1657 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 M0R3G1 203 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 BMP10O95393 424 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 DNAJC9Q8WXX5 260 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 CHST12Q9NRB3 414 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 THG1LQ9NWX6 298 aaKnown RBP19.78■□□□□ 0.76
UPF1-201ENST00000262803 KIAA1210Q9ULL0 1709 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 CXCL11O14625 94 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 WDR47O94967 919 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 SOAT1P35610 550 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 TRIP10Q15642 601 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 CHI3L2Q15782 390 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 ADCK1Q86TW2 530 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 FAM83AQ86UY5 434 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 ADGRF2Q8IZF7 708 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 FBXO25Q8TCJ0 367 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 SKA1Q96BD8 255 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 ADNPQ9H2P0 1102 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 GBA2Q9HCG7 927 aaPredicted RBP19.78■□□□□ 0.76
UPF1-201ENST00000262803 F8W810 466 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 ARP10275 920 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 RARGP13631 454 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 PMS1P54277 932 aaKnown RBP19.78■□□□□ 0.76
UPF1-201ENST00000262803 C4orf19Q8IY42 314 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 NSL1Q96IY1 281 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 APOL5Q9BWW9 433 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 LRRC40Q9H9A6 602 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 TMBIM4Q9HC24 238 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 OSGEPQ9NPF4 335 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 STRNO43815 780 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 SEC24DO94855 1032 aaPredicted RBP19.78■□□□□ 0.76
UPF1-201ENST00000262803 DEFA1P59665 94 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 DEFA3P59666 94 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 ARID3BQ8IVW6 561 aaPredicted RBP19.78■□□□□ 0.76
UPF1-201ENST00000262803 ZNF507Q8TCN5 953 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 SH3GL1Q99961 368 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 MTFR1LQ9H019 292 aa19.78■□□□□ 0.76
UPF1-201ENST00000262803 THP07101 528 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 RBP1P09455 135 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 PYGMP11217 842 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 PAX3P23760 479 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 SEZ6Q53EL9 994 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 ERAP2Q6P179 960 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 SOCS4Q8WXH5 440 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 CTXN3Q4LDR2 81 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 PRPF39Q86UA1 669 aaKnown RBP19.77■□□□□ 0.76
UPF1-201ENST00000262803 SYNPO2Q9UMS6 1093 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 PRG3Q9Y2Y8 225 aaPredicted RBP19.77■□□□□ 0.76
UPF1-201ENST00000262803 LOC100653049A0A140TA62 436 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 F8VZ95 297 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 KRT34O76011 436 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 CPA2P48052 419 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 CYP4Z1Q86W10 505 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 EME1Q96AY2 570 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 ZMAT2Q96NC0 199 aaKnown RBP19.77■□□□□ 0.76
UPF1-201ENST00000262803 ILKAPQ9H0C8 392 aaPredicted RBP19.77■□□□□ 0.76
UPF1-201ENST00000262803 ANKZF1Q9H8Y5 726 aa19.77■□□□□ 0.76
UPF1-201ENST00000262803 TMX2Q9Y320 296 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms