RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TCRBV9S1A1TA0A576 114 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 C2CD4BA6NLJ0 364 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 LPXNO60711 386 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 INHBAP08476 426 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 TXNP10599 105 aaKnown RBP17.12■□□□□ 0.33
HOXD3-201ENST00000249440 KCNJ11Q14654 390 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 KCTD2Q14681 263 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 FBXO16Q8IX29 292 aaPredicted RBP17.12■□□□□ 0.33
HOXD3-201ENST00000249440 TTC39CQ8N584 583 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 SLC44A1Q8WWI5 657 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 ZBTB10Q96DT7 871 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 KLF6Q99612 283 aaPredicted RBP17.12■□□□□ 0.33
HOXD3-201ENST00000249440 ASCC2Q9H1I8 757 aaPredicted RBP17.12■□□□□ 0.33
HOXD3-201ENST00000249440 R3HDMLQ9H3Y0 253 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 FAM124BQ9H5Z6 455 aaPredicted RBP17.12■□□□□ 0.33
HOXD3-201ENST00000249440 ERAP1Q9NZ08 941 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 KIAA1257Q9ULG3 409 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 KBTBD13C9JR72 458 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 H7C0C1 242 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 IRF6O14896 467 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 CNMDO75829 334 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 T-ENOLP0DO92 83 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 ATP5OP48047 213 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 NRLP54845 237 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 TAF1BQ53T94 588 aaPredicted RBP17.12■□□□□ 0.33
HOXD3-201ENST00000249440 SH3PXD2AQ5TCZ1 1133 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 OR6B2Q6IFH4 312 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 IGDCC3Q8IVU1 814 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 TMEM130Q8N3G9 435 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 COPS5Q92905 334 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 FAF2Q96CS3 445 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 RNF157Q96PX1 679 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 FRMD8Q9BZ67 464 aaPredicted RBP17.12■□□□□ 0.33
HOXD3-201ENST00000249440 PAK5Q9P286 719 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 SLC17A7Q9P2U7 560 aa17.12■□□□□ 0.33
HOXD3-201ENST00000249440 A0A0G2JLL6 359 aaPredicted RBP17.11■□□□□ 0.33
HOXD3-201ENST00000249440 HNRNPCL1O60812 293 aaKnown RBP17.11■□□□□ 0.33
HOXD3-201ENST00000249440 C22orf31O95567 290 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 YWHAGP61981 247 aaKnown RBP eCLIP17.11■□□□□ 0.33
HOXD3-201ENST00000249440 INCA1Q0VD86 236 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 KRT81Q14533 505 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 PDK2Q15119 407 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 KYAT1Q16773 422 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 KBTBD12Q3ZCT8 623 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 ZNF449Q6P9G9 518 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 LCLAT1Q6UWP7 414 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 CYP4V2Q6ZWL3 525 aaPredicted RBP17.11■□□□□ 0.33
HOXD3-201ENST00000249440 PRRT2Q7Z6L0 340 aaPredicted RBP17.11■□□□□ 0.33
HOXD3-201ENST00000249440 SLC7A6OSQ96CW6 309 aaPredicted RBP17.11■□□□□ 0.33
HOXD3-201ENST00000249440 TRIM55Q9BYV6 548 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 RNPEPQ9H4A4 650 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 SAR1AQ9NR31 198 aa17.11■□□□□ 0.33
HOXD3-201ENST00000249440 E5RJQ4 531 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 TRAFD1O14545 582 aaPredicted RBP17.1■□□□□ 0.33
HOXD3-201ENST00000249440 NDST1P52848 882 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 IGBP1P78318 339 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 CBLBQ13191 982 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 TMEM132DQ14C87 1099 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 CDO1Q16878 200 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 C15orf59Q2T9L4 293 aaPredicted RBP17.1■□□□□ 0.33
HOXD3-201ENST00000249440 SLC10A6Q3KNW5 377 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 BOLA3Q53S33 107 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 PLEKHG4Q58EX7 1191 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 ZNF484Q5JVG2 852 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 MAP1SQ66K74 1059 aaPredicted RBP17.1■□□□□ 0.33
HOXD3-201ENST00000249440 MTDHQ86UE4 582 aaKnown RBP17.1■□□□□ 0.33
HOXD3-201ENST00000249440 APOPT1Q96IL0 206 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 PDZD7Q9H5P4 517 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 TSPAN16Q9UKR8 245 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 DNAJC25-GNG10A0A024R161 153 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 A0A087WZ62 844 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 CSDE1O75534 798 aaKnown RBP17.1■□□□□ 0.33
HOXD3-201ENST00000249440 CBX6O95503 412 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 TTLL4Q14679 1199 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 C1orf228Q6PIY5 440 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 FAM183BPQ6ZVS7 135 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 CHSY1Q86X52 802 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 MMP19Q99542 508 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 FDXACB1Q9BRP7 624 aaPredicted RBP17.1■□□□□ 0.33
HOXD3-201ENST00000249440 TSSK1BQ9BXA7 367 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 NT5C1AQ9BXI3 368 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 TBC1D10AQ9BXI6 508 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 USP29Q9HBJ7 922 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 PNPLA8Q9NP80 782 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 RAB6BQ9NRW1 208 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 ITGA11Q9UKX5 1188 aa17.1■□□□□ 0.33
HOXD3-201ENST00000249440 CITO14578 2027 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 CFAP69A5D8W1 941 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 GLTPD2A6NH11 291 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 PIK3R2O00459 728 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 DIAPH2O60879 1101 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 DHRS4L1P0CG22 281 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 RBP5P82980 135 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 SLC18A2Q05940 514 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 STILQ15468 1287 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 AMHR2Q16671 573 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 TRNP1Q6NT89 227 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 CLNKQ7Z7G1 428 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 IFNLR1Q8IU57 520 aaPredicted RBP17.09■□□□□ 0.33
HOXD3-201ENST00000249440 PLD5Q8N7P1 536 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms