RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W ADH1P00330 348 aaKnown RBP4.12□□□□□ -1.75
CAF40YNL288W YDL022C-AP0C5L6 82 aa4.12□□□□□ -1.75
CAF40YNL288W HAP3P13434 144 aa4.12□□□□□ -1.75
CAF40YNL288W YPL073CP40323 161 aa4.12□□□□□ -1.75
CAF40YNL288W YCR007CP25354 239 aa4.11□□□□□ -1.75
CAF40YNL288W YDL157CQ12082 118 aa4.11□□□□□ -1.75
CAF40YNL288W AQY2P0CD90 149 aa4.1□□□□□ -1.75
CAF40YNL288W FUN14P18411 198 aa4.1□□□□□ -1.75
CAF40YNL288W LSM8P47093 109 aaKnown RBP4.1□□□□□ -1.75
CAF40YNL288W YGL041C-BQ3E750 60 aa4.1□□□□□ -1.75
CAF40YNL288W IGO2Q9P305 131 aa4.1□□□□□ -1.75
CAF40YNL288W YCR043CP25361 127 aa4.09□□□□□ -1.75
CAF40YNL288W RPF1P38805 295 aaKnown RBP4.09□□□□□ -1.75
CAF40YNL288W OXA1P39952 402 aa4.09□□□□□ -1.75
CAF40YNL288W MRPS12P53732 153 aa4.09□□□□□ -1.75
CAF40YNL288W ECM12O13529 151 aa4.08□□□□□ -1.76
CAF40YNL288W MBF1O14467 151 aaKnown RBP4.08□□□□□ -1.76
CAF40YNL288W RPL28P02406 149 aaKnown RBP4.08□□□□□ -1.76
CAF40YNL288W ATP5P09457 212 aa4.08□□□□□ -1.76
CAF40YNL288W YEL067CP39978 195 aa4.08□□□□□ -1.76
CAF40YNL288W CWP2P43497 92 aa4.08□□□□□ -1.76
CAF40YNL288W ABF2Q02486 183 aa4.08□□□□□ -1.76
CAF40YNL288W NAT5Q08689 176 aa4.08□□□□□ -1.76
CAF40YNL288W SMP1P38128 452 aa4.07□□□□□ -1.76
CAF40YNL288W MVB12P42939 101 aa4.07□□□□□ -1.76
CAF40YNL288W YFL019CP43576 117 aa4.07□□□□□ -1.76
CAF40YNL288W SMD1Q02260 146 aaPredicted RBP4.07□□□□□ -1.76
CAF40YNL288W YBL039W-BP0C268 59 aa4.06□□□□□ -1.76
CAF40YNL288W UGX2P32772 223 aa4.06□□□□□ -1.76
CAF40YNL288W PEX22P39718 180 aa4.06□□□□□ -1.76
CAF40YNL288W YNR077CP53758 84 aa4.06□□□□□ -1.76
CAF40YNL288W LCL1Q02786 101 aa4.06□□□□□ -1.76
CAF40YNL288W YLR307C-AQ3E825 87 aa4.06□□□□□ -1.76
CAF40YNL288W STF1P01098 86 aa4.05□□□□□ -1.76
CAF40YNL288W YLL006W-AQ3E814 58 aa4.05□□□□□ -1.76
CAF40YNL288W Q0032Q9ZZX7 96 aa4.05□□□□□ -1.76
CAF40YNL288W RPL29P05747 59 aaPredicted RBP4.04□□□□□ -1.76
CAF40YNL288W YNL190WP53872 204 aa4.04□□□□□ -1.76
CAF40YNL288W EOS1P53938 366 aa4.04□□□□□ -1.76
CAF40YNL288W YML079WQ03629 201 aa4.04□□□□□ -1.76
CAF40YNL288W YDL085C-AQ3E7B7 68 aaKnown RBP4.04□□□□□ -1.76
CAF40YNL288W SCM4P32564 187 aa4.03□□□□□ -1.76
CAF40YNL288W PAU23Q07987 124 aa4.03□□□□□ -1.76
CAF40YNL288W PAU17Q12370 124 aa4.03□□□□□ -1.76
CAF40YNL288W MMS2P53152 137 aa4.02□□□□□ -1.77
CAF40YNL288W SAE3P89114 91 aa4.02□□□□□ -1.77
CAF40YNL288W YOR020W-AQ3E824 90 aa4.02□□□□□ -1.77
CAF40YNL288W AIM19P40502 157 aa4.01□□□□□ -1.77
CAF40YNL288W YIA6P40556 373 aa4.01□□□□□ -1.77
CAF40YNL288W YFR057WP43625 151 aa4.01□□□□□ -1.77
CAF40YNL288W YKL023C-AQ2V2P3 75 aa4.01□□□□□ -1.77
CAF40YNL288W IGD1P43598 195 aa4□□□□□ -1.77
CAF40YNL288W ELC1Q03071 99 aa4□□□□□ -1.77
CAF40YNL288W HPA2Q06592 156 aa4□□□□□ -1.77
CAF40YNL288W UBC4P15731 148 aa3.99□□□□□ -1.77
CAF40YNL288W YGL193CP53097 103 aa3.99□□□□□ -1.77
CAF40YNL288W RGM1Q00453 211 aa3.99□□□□□ -1.77
CAF40YNL288W YLR363W-AQ3E747 85 aa3.99□□□□□ -1.77
CAF40YNL288W RPL26AP05743 127 aaKnown RBP3.98□□□□□ -1.77
CAF40YNL288W COX10P21592 462 aa3.98□□□□□ -1.77
CAF40YNL288W MID2P36027 376 aa3.98□□□□□ -1.77
CAF40YNL288W KNH1P50112 268 aa3.98□□□□□ -1.77
CAF40YNL288W RPL26BP53221 127 aaKnown RBP3.98□□□□□ -1.77
CAF40YNL288W YER039C-AP0CD97 72 aa3.97□□□□□ -1.77
CAF40YNL288W YHR130CP38834 111 aa3.96□□□□□ -1.78
CAF40YNL288W CWC27Q02770 301 aa3.96□□□□□ -1.78
CAF40YNL288W YBL112CQ3E7Y4 105 aa3.96□□□□□ -1.78
CAF40YNL288W YER181CP40097 107 aa3.95□□□□□ -1.78
CAF40YNL288W ICY1Q04329 127 aa3.95□□□□□ -1.78
CAF40YNL288W IRC21Q04772 201 aa3.95□□□□□ -1.78
CAF40YNL288W PAI3P01094 68 aa3.94□□□□□ -1.78
CAF40YNL288W CPR1P14832 162 aaKnown RBP3.94□□□□□ -1.78
CAF40YNL288W POP7P38291 140 aa3.94□□□□□ -1.78
CAF40YNL288W GLC8P41818 229 aa3.94□□□□□ -1.78
CAF40YNL288W YNL042W-BQ3E7Z2 85 aa3.94□□□□□ -1.78
CAF40YNL288W ARO2P28777 376 aaKnown RBP3.93□□□□□ -1.78
CAF40YNL288W YLR296WQ05898 108 aa3.93□□□□□ -1.78
CAF40YNL288W NHP2P32495 156 aaPredicted RBP3.92□□□□□ -1.78
CAF40YNL288W YFL067WP43537 175 aa3.92□□□□□ -1.78
CAF40YNL288W MHR1Q06630 226 aa3.92□□□□□ -1.78
CAF40YNL288W YPL257WQ08974 193 aa3.92□□□□□ -1.78
CAF40YNL288W SPT4P32914 102 aaPredicted RBP3.91□□□□□ -1.78
CAF40YNL288W LSM6Q06406 86 aaKnown RBP3.91□□□□□ -1.78
CAF40YNL288W YBR230W-AQ3E762 66 aa3.91□□□□□ -1.78
CAF40YNL288W YJL127C-BQ3E828 52 aa3.91□□□□□ -1.78
CAF40YNL288W DDR48P18899 430 aaKnown RBP3.9□□□□□ -1.79
CAF40YNL288W DDR2P89113 61 aa3.9□□□□□ -1.79
CAF40YNL288W FYV5P25585 152 aa3.89□□□□□ -1.79
CAF40YNL288W MRPL24P36525 258 aaPredicted RBP3.89□□□□□ -1.79
CAF40YNL288W HUR1P45820 110 aa3.89□□□□□ -1.79
CAF40YNL288W YLR236CA0A023PZG4 107 aa3.88□□□□□ -1.79
CAF40YNL288W EDC2P40023 145 aaPredicted RBP3.88□□□□□ -1.79
CAF40YNL288W SPG1P50088 95 aa3.88□□□□□ -1.79
CAF40YNL288W YGR121W-AQ3E816 71 aa3.88□□□□□ -1.79
CAF40YNL288W YLR156WP0CE96 114 aa3.87□□□□□ -1.79
CAF40YNL288W YLR159WP0CE97 114 aa3.87□□□□□ -1.79
CAF40YNL288W YLR161WP0CE98 114 aa3.87□□□□□ -1.79
CAF40YNL288W HYP2P23301 157 aaKnown RBP3.87□□□□□ -1.79
CAF40YNL288W YIL102C-AQ2V2P5 75 aa3.87□□□□□ -1.79
CAF40YNL288W YOR034C-AQ3E735 80 aa3.87□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 23.1 ms