RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C YCR075W-AQ3E830 75 aa3.39□□□□□ -1.87
EAR1YMR171C YBR056W-AI2HB52 66 aa3.39□□□□□ -1.87
EAR1YMR171C NRG2P38082 220 aa3.39□□□□□ -1.87
EAR1YMR171C DSE2P38844 325 aa3.39□□□□□ -1.87
EAR1YMR171C MIG3P39943 394 aa3.39□□□□□ -1.87
EAR1YMR171C YIA6P40556 373 aa3.39□□□□□ -1.87
EAR1YMR171C YNL190WP53872 204 aa3.39□□□□□ -1.87
EAR1YMR171C YNL184CP53876 108 aa3.39□□□□□ -1.87
EAR1YMR171C PMP3P87284 55 aa3.39□□□□□ -1.87
EAR1YMR171C YAR029WP39549 74 aa3.38□□□□□ -1.87
EAR1YMR171C YEL008WP40001 126 aa3.38□□□□□ -1.87
EAR1YMR171C YIL059CP40520 121 aa3.38□□□□□ -1.87
EAR1YMR171C YGL088WP53151 121 aa3.38□□□□□ -1.87
EAR1YMR171C YOR304C-AO14468 76 aa3.37□□□□□ -1.87
EAR1YMR171C RRT13P40042 185 aa3.37□□□□□ -1.87
EAR1YMR171C HUR1P45820 110 aa3.37□□□□□ -1.87
EAR1YMR171C RPL2AP0CX45 254 aaKnown RBP3.36□□□□□ -1.87
EAR1YMR171C RPL2BP0CX46 254 aaKnown RBP3.36□□□□□ -1.87
EAR1YMR171C KRE1P17260 313 aa3.36□□□□□ -1.87
EAR1YMR171C YCL042WP25572 119 aa3.36□□□□□ -1.87
EAR1YMR171C AIM19P40502 157 aa3.36□□□□□ -1.87
EAR1YMR171C SKI6P46948 246 aaPredicted RBP3.36□□□□□ -1.87
EAR1YMR171C ALG13P53178 202 aa3.36□□□□□ -1.87
EAR1YMR171C YAL063C-AQ3E791 96 aa3.36□□□□□ -1.87
EAR1YMR171C YFL041W-AQ3E817 63 aa3.36□□□□□ -1.87
EAR1YMR171C Q0297Q9ZZV8 51 aa3.36□□□□□ -1.87
EAR1YMR171C MEC1P38111 2368 aa3.35□□□□□ -1.87
EAR1YMR171C PBI2P0CT04 75 aaKnown RBP3.35□□□□□ -1.87
EAR1YMR171C RPS11AP0CX47 156 aaKnown RBP3.35□□□□□ -1.87
EAR1YMR171C RPS11BP0CX48 156 aaKnown RBP3.35□□□□□ -1.87
EAR1YMR171C UBC5P15732 148 aa3.35□□□□□ -1.87
EAR1YMR171C MRPL24P36525 258 aaPredicted RBP3.35□□□□□ -1.87
EAR1YMR171C YEL045CP32616 141 aa3.34□□□□□ -1.87
EAR1YMR171C ARC15P40518 154 aaRIP-Chip data3.34□□□□□ -1.87not detected
EAR1YMR171C CWP2P43497 92 aa3.34□□□□□ -1.87
EAR1YMR171C YFR035CP43608 114 aa3.34□□□□□ -1.87
EAR1YMR171C YOR020W-AQ3E824 90 aa3.34□□□□□ -1.87
EAR1YMR171C TAR1Q8TGM6 124 aa3.34□□□□□ -1.87
EAR1YMR171C YPS5P53057 165 aa3.33□□□□□ -1.88
EAR1YMR171C GIS2P53849 153 aaKnown RBP RIP-Chip data3.33□□□□□ -1.88not detected
EAR1YMR171C RGM1Q00453 211 aa3.33□□□□□ -1.88
EAR1YMR171C COX12Q01519 83 aa3.33□□□□□ -1.88
EAR1YMR171C RAD6P06104 172 aa3.33□□□□□ -1.88
EAR1YMR171C YMR295CQ03559 197 aa3.33□□□□□ -1.88
EAR1YMR171C YHR139C-AO13536 103 aa3.32□□□□□ -1.88
EAR1YMR171C SVP26P38869 228 aa3.32□□□□□ -1.88
EAR1YMR171C YGR039WP53225 103 aa3.32□□□□□ -1.88
EAR1YMR171C YDR381C-AQ3E6R5 114 aa3.32□□□□□ -1.88
EAR1YMR171C RPB9P27999 122 aa3.31□□□□□ -1.88
EAR1YMR171C MSA2P36157 363 aa3.31□□□□□ -1.88
EAR1YMR171C MPC2P38857 129 aa3.31□□□□□ -1.88
EAR1YMR171C ERI1P62651 68 aaKnown RBP3.31□□□□□ -1.88
EAR1YMR171C COF1Q03048 143 aaKnown RBP3.31□□□□□ -1.88
EAR1YMR171C VAM10Q08474 114 aa3.31□□□□□ -1.88
EAR1YMR171C EMC6Q12431 108 aa3.31□□□□□ -1.88
EAR1YMR171C ENV10Q99382 181 aa3.31□□□□□ -1.88
EAR1YMR171C YMR122W-AQ3E842 84 aa3.3□□□□□ -1.88
EAR1YMR171C YHL042WP38729 150 aa3.3□□□□□ -1.88
EAR1YMR171C YGR240C-AQ3E786 66 aa3.3□□□□□ -1.88
EAR1YMR171C YLL006W-AQ3E814 58 aa3.3□□□□□ -1.88
EAR1YMR171C YPL229WQ99395 206 aa3.3□□□□□ -1.88
EAR1YMR171C YBR219CP38317 127 aa3.29□□□□□ -1.88
EAR1YMR171C YPL080CQ02826 108 aa3.29□□□□□ -1.88
EAR1YMR171C YLR236CA0A023PZG4 107 aa3.28□□□□□ -1.88
EAR1YMR171C YJR107C-AP0CT86 78 aa3.28□□□□□ -1.88
EAR1YMR171C YHR212W-AP0CX91 67 aa3.28□□□□□ -1.88
EAR1YMR171C YOR034C-AQ3E735 80 aa3.28□□□□□ -1.88
EAR1YMR171C YIR021W-AQ3E739 70 aa3.28□□□□□ -1.88
EAR1YMR171C SMP1P38128 452 aa3.27□□□□□ -1.89
EAR1YMR171C KNH1P50112 268 aa3.27□□□□□ -1.89
EAR1YMR171C SHH4Q06236 168 aa3.27□□□□□ -1.89
EAR1YMR171C YDR119W-AQ2V2P9 66 aa3.27□□□□□ -1.89
EAR1YMR171C YMR175W-AQ3E766 64 aa3.27□□□□□ -1.89
EAR1YMR171C YBL112CQ3E7Y4 105 aa3.27□□□□□ -1.89
EAR1YMR171C ERG28P40030 148 aa3.27□□□□□ -1.89
EAR1YMR171C YDR274CP87283 123 aa3.26□□□□□ -1.89
EAR1YMR171C HAL1Q01766 294 aa3.26□□□□□ -1.89
EAR1YMR171C IRC21Q04772 201 aa3.26□□□□□ -1.89
EAR1YMR171C YDR029WQ12111 104 aa3.26□□□□□ -1.89
EAR1YMR171C YPR010C-AA5Z2X5 72 aa3.25□□□□□ -1.89
EAR1YMR171C YCR001WP25347 104 aa3.25□□□□□ -1.89
EAR1YMR171C YSY6P38374 65 aa3.25□□□□□ -1.89
EAR1YMR171C ICY1Q04329 127 aa3.25□□□□□ -1.89
EAR1YMR171C YDL241WQ07738 123 aa3.25□□□□□ -1.89
EAR1YMR171C TSC3Q3E790 80 aa3.25□□□□□ -1.89
EAR1YMR171C YPL038W-AQ3E7B4 63 aa3.25□□□□□ -1.89
EAR1YMR171C YAL065CO13511 128 aa3.24□□□□□ -1.89
EAR1YMR171C RPL29P05747 59 aaPredicted RBP3.24□□□□□ -1.89
EAR1YMR171C ATP18P81450 59 aa3.24□□□□□ -1.89
EAR1YMR171C STF1P01098 86 aa3.24□□□□□ -1.89
EAR1YMR171C RPL26AP05743 127 aaKnown RBP3.24□□□□□ -1.89
EAR1YMR171C RPL26BP53221 127 aaKnown RBP3.24□□□□□ -1.89
EAR1YMR171C MPC3P53311 146 aa3.24□□□□□ -1.89
EAR1YMR171C SMD1Q02260 146 aaPredicted RBP3.24□□□□□ -1.89
EAR1YMR171C ECM12O13529 151 aa3.23□□□□□ -1.89
EAR1YMR171C TOM6P33448 61 aa3.23□□□□□ -1.89
EAR1YMR171C MVB12P42939 101 aa3.23□□□□□ -1.89
EAR1YMR171C YHL018WP38744 120 aaPredicted RBP3.22□□□□□ -1.89
EAR1YMR171C RPC10P40422 70 aa3.22□□□□□ -1.89
EAR1YMR171C RSM19P53733 91 aaPredicted RBP3.22□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 25.5 ms