RNA–Protein interactions for RNA: YLR396C

VPS33, Transcript of ATP-binding protein that is a subunit of the HOPS and CORVET complexes, yeastyeast

Gene VPS33, Length 2,076 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS33YLR396C YMR244WQ04018 355 aa2.41□□□□□ -2.02
VPS33YLR396C FAB1P34756 2278 aa2.41□□□□□ -2.02
VPS33YLR396C RPL16BP26785 198 aaKnown RBP2.41□□□□□ -2.02
VPS33YLR396C MPC2P38857 129 aa2.41□□□□□ -2.02
VPS33YLR396C YOR008C-AQ3E7B9 74 aa2.41□□□□□ -2.02
VPS33YLR396C YIL046W-AQ3E7Z4 54 aa2.41□□□□□ -2.02
VPS33YLR396C BET1P22804 142 aa2.4□□□□□ -2.02
VPS33YLR396C YKR045CP36138 183 aa2.4□□□□□ -2.02
VPS33YLR396C YNL194CP40169 301 aa2.4□□□□□ -2.02
VPS33YLR396C SFT1P43682 97 aa2.4□□□□□ -2.02
VPS33YLR396C ECM19Q06011 112 aa2.4□□□□□ -2.02
VPS33YLR396C SEN1Q00416 2231 aaKnown RBP2.4□□□□□ -2.03
VPS33YLR396C CCW14O13547 238 aa2.4□□□□□ -2.03
VPS33YLR396C MSA2P36157 363 aa2.4□□□□□ -2.03
VPS33YLR396C YER084WP40057 128 aa2.4□□□□□ -2.03
VPS33YLR396C DCV1P43595 202 aa2.4□□□□□ -2.03
VPS33YLR396C HUR1P45820 110 aa2.4□□□□□ -2.03
VPS33YLR396C PIR5P46999 287 aa2.4□□□□□ -2.03
VPS33YLR396C YGR164WP53291 111 aa2.4□□□□□ -2.03
VPS33YLR396C YGR219WP53307 113 aa2.4□□□□□ -2.03
VPS33YLR396C YDR246W-AQ3E763 66 aa2.4□□□□□ -2.03
VPS33YLR396C UBC4P15731 148 aa2.39□□□□□ -2.03
VPS33YLR396C RRT1P38192 103 aa2.39□□□□□ -2.03
VPS33YLR396C YJL027CP47063 138 aaPredicted RBP2.39□□□□□ -2.03
VPS33YLR396C YOR029WQ12243 111 aa2.39□□□□□ -2.03
VPS33YLR396C YKL183C-AQ3E765 70 aa2.39□□□□□ -2.03
VPS33YLR396C BPH1P25356 2167 aa2.38□□□□□ -2.03
VPS33YLR396C YAR029WP39549 74 aa2.38□□□□□ -2.03
VPS33YLR396C PBP4Q07362 185 aaKnown RBP2.38□□□□□ -2.03
VPS33YLR396C YLR285C-AQ3E771 56 aa2.38□□□□□ -2.03
VPS33YLR396C RPB9P27999 122 aa2.38□□□□□ -2.03
VPS33YLR396C YHR022CP38763 256 aa2.38□□□□□ -2.03
VPS33YLR396C CTR2P38865 189 aa2.38□□□□□ -2.03
VPS33YLR396C PEX17P40155 199 aa2.38□□□□□ -2.03
VPS33YLR396C YJR146WP47174 117 aa2.38□□□□□ -2.03
VPS33YLR396C YOL160WQ08321 113 aa2.38□□□□□ -2.03
VPS33YLR396C YNL277W-AQ3E7Z0 62 aa2.38□□□□□ -2.03
VPS33YLR396C TDA8Q6B2U8 126 aa2.38□□□□□ -2.03
VPS33YLR396C YLR156WP0CE96 114 aa2.37□□□□□ -2.03
VPS33YLR396C YLR159WP0CE97 114 aa2.37□□□□□ -2.03
VPS33YLR396C YLR161WP0CE98 114 aa2.37□□□□□ -2.03
VPS33YLR396C YFL019CP43576 117 aa2.37□□□□□ -2.03
VPS33YLR396C YOR034C-AQ3E735 80 aa2.37□□□□□ -2.03
VPS33YLR396C RRT15Q3E811 62 aa2.37□□□□□ -2.03
VPS33YLR396C YMR105W-AQ8TGS8 64 aa2.37□□□□□ -2.03
VPS33YLR396C MRPL39P36533 70 aa2.37□□□□□ -2.03
VPS33YLR396C SHU1P38751 150 aa2.37□□□□□ -2.03
VPS33YLR396C YGR025WP53216 100 aa2.37□□□□□ -2.03
VPS33YLR396C SMD1Q02260 146 aaPredicted RBP2.37□□□□□ -2.03
VPS33YLR396C ARC15P40518 154 aaRIP-Chip data2.36□□□□□ -2.03not detected
VPS33YLR396C EDC1P53080 175 aaPredicted RBP2.36□□□□□ -2.03
VPS33YLR396C ERI1P62651 68 aaKnown RBP2.36□□□□□ -2.03
VPS33YLR396C YOR268CQ08734 132 aa2.36□□□□□ -2.03
VPS33YLR396C RPL39P04650 51 aa2.35□□□□□ -2.03
VPS33YLR396C AIM4P38305 123 aaPredicted RBP2.35□□□□□ -2.03
VPS33YLR396C SIP18P50263 79 aa2.35□□□□□ -2.03
VPS33YLR396C RGM1Q00453 211 aa2.35□□□□□ -2.03
VPS33YLR396C IRC21Q04772 201 aa2.35□□□□□ -2.03
VPS33YLR396C ATP20Q12233 115 aa2.35□□□□□ -2.03
VPS33YLR396C RSM19P53733 91 aaPredicted RBP2.35□□□□□ -2.03
VPS33YLR396C ICY1Q04329 127 aa2.35□□□□□ -2.03
VPS33YLR396C CSF1Q12150 2958 aa2.34□□□□□ -2.03
VPS33YLR396C QCR8P08525 94 aa2.34□□□□□ -2.03
VPS33YLR396C YBR200W-AQ3E755 54 aa2.34□□□□□ -2.03
VPS33YLR396C YJR107C-AP0CT86 78 aa2.33□□□□□ -2.04
VPS33YLR396C YGL088WP53151 121 aa2.33□□□□□ -2.04
VPS33YLR396C YNL046WP53956 172 aa2.33□□□□□ -2.04
VPS33YLR396C YLR236CA0A023PZG4 107 aa2.33□□□□□ -2.04
VPS33YLR396C YEL008WP40001 126 aa2.33□□□□□ -2.04
VPS33YLR396C ICS3P47034 131 aa2.33□□□□□ -2.04
VPS33YLR396C MMS2P53152 137 aa2.33□□□□□ -2.04
VPS33YLR396C MIC10Q96VH5 97 aa2.33□□□□□ -2.04
VPS33YLR396C SPT4P32914 102 aaPredicted RBP2.32□□□□□ -2.04
VPS33YLR396C MRPL38P35996 138 aaPredicted RBP2.32□□□□□ -2.04
VPS33YLR396C YOR032W-AQ8TGS1 66 aa2.32□□□□□ -2.04
VPS33YLR396C YAL065CO13511 128 aa2.32□□□□□ -2.04
VPS33YLR396C POR2P40478 281 aa2.32□□□□□ -2.04
VPS33YLR396C GAT4P40569 121 aa2.32□□□□□ -2.04
VPS33YLR396C YGR121W-AQ3E816 71 aa2.32□□□□□ -2.04
VPS33YLR396C NOP10Q6Q547 58 aaPredicted RBP2.32□□□□□ -2.04
VPS33YLR396C RPS23AP0CX29 145 aaKnown RBP2.31□□□□□ -2.04
VPS33YLR396C RPS23BP0CX30 145 aa2.31□□□□□ -2.04
VPS33YLR396C YDR274CP87283 123 aa2.31□□□□□ -2.04
VPS33YLR396C SPG4Q04438 115 aa2.31□□□□□ -2.04
VPS33YLR396C YPR195CQ06594 109 aa2.31□□□□□ -2.04
VPS33YLR396C YOR381W-AQ3E804 55 aa2.31□□□□□ -2.04
VPS33YLR396C RPL26AP05743 127 aaKnown RBP2.3□□□□□ -2.04
VPS33YLR396C EDC2P40023 145 aaPredicted RBP2.3□□□□□ -2.04
VPS33YLR396C YFR035CP43608 114 aa2.3□□□□□ -2.04
VPS33YLR396C RPL38P49167 78 aaKnown RBP2.3□□□□□ -2.04
VPS33YLR396C RPL26BP53221 127 aaKnown RBP2.3□□□□□ -2.04
VPS33YLR396C MPC3P53311 146 aa2.3□□□□□ -2.04
VPS33YLR396C ATP18P81450 59 aa2.3□□□□□ -2.04
VPS33YLR396C YMR295CQ03559 197 aa2.3□□□□□ -2.04
VPS33YLR396C YLR162WQ06235 118 aa2.3□□□□□ -2.04
VPS33YLR396C HFA1P32874 2273 aa2.3□□□□□ -2.04
VPS33YLR396C YBL081WP38180 368 aaKnown RBP2.3□□□□□ -2.04
VPS33YLR396C RSM18P40033 138 aa2.3□□□□□ -2.04
VPS33YLR396C YPL278CQ08990 100 aa2.3□□□□□ -2.04
VPS33YLR396C TAO3P40468 2376 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 52.5 ms