RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W CAX4P53223 239 aa3.17□□□□□ -1.9
PRE9YGR135W COF1Q03048 143 aaKnown RBP3.17□□□□□ -1.9
PRE9YGR135W YOL085CQ99345 113 aa3.17□□□□□ -1.9
PRE9YGR135W PBI2P0CT04 75 aaKnown RBP3.16□□□□□ -1.9
PRE9YGR135W YBL081WP38180 368 aaKnown RBP3.16□□□□□ -1.9
PRE9YGR135W YHR022CP38763 256 aa3.16□□□□□ -1.9
PRE9YGR135W YIL059CP40520 121 aa3.16□□□□□ -1.9
PRE9YGR135W YMR230W-AQ3E7B5 62 aa3.16□□□□□ -1.9
PRE9YGR135W YAL067W-AQ8TGK6 75 aa3.16□□□□□ -1.9
PRE9YGR135W ECM12O13529 151 aa3.15□□□□□ -1.91
PRE9YGR135W YER039C-AP0CD97 72 aa3.15□□□□□ -1.91
PRE9YGR135W MSA2P36157 363 aa3.15□□□□□ -1.91
PRE9YGR135W YHL042WP38729 150 aa3.15□□□□□ -1.91
PRE9YGR135W KNH1P50112 268 aa3.15□□□□□ -1.91
PRE9YGR135W SHH4Q06236 168 aa3.15□□□□□ -1.91
PRE9YGR135W YDR029WQ12111 104 aa3.15□□□□□ -1.91
PRE9YGR135W CCW12Q12127 133 aa3.15□□□□□ -1.91
PRE9YGR135W YCL048W-AQ2V2Q2 79 aa3.15□□□□□ -1.91
PRE9YGR135W YPL038W-AQ3E7B4 63 aa3.15□□□□□ -1.91
PRE9YGR135W BRR2P32639 2163 aaKnown RBP3.14□□□□□ -1.91
PRE9YGR135W SHU1P38751 150 aa3.14□□□□□ -1.91
PRE9YGR135W MPC2P38857 129 aa3.14□□□□□ -1.91
PRE9YGR135W HUR1P45820 110 aa3.14□□□□□ -1.91
PRE9YGR135W TAO3P40468 2376 aa3.14□□□□□ -1.91
PRE9YGR135W RPS28BP0C0X0 67 aaKnown RBP3.13□□□□□ -1.91
PRE9YGR135W UBC5P15732 148 aa3.13□□□□□ -1.91
PRE9YGR135W TOM6P33448 61 aa3.13□□□□□ -1.91
PRE9YGR135W SBH2P52871 88 aa3.13□□□□□ -1.91
PRE9YGR135W ECM19Q06011 112 aa3.13□□□□□ -1.91
PRE9YGR135W YPR013CQ12145 317 aa3.13□□□□□ -1.91
PRE9YGR135W RPS28AQ3E7X9 67 aaPredicted RBP3.13□□□□□ -1.91
PRE9YGR135W QCR8P08525 94 aa3.12□□□□□ -1.91
PRE9YGR135W YHL018WP38744 120 aaPredicted RBP3.12□□□□□ -1.91
PRE9YGR135W SVP26P38869 228 aa3.12□□□□□ -1.91
PRE9YGR135W YEL008WP40001 126 aa3.12□□□□□ -1.91
PRE9YGR135W YLR042CQ07990 161 aa3.12□□□□□ -1.91
PRE9YGR135W RPL2AP0CX45 254 aaKnown RBP3.11□□□□□ -1.91
PRE9YGR135W RPL2BP0CX46 254 aaKnown RBP3.11□□□□□ -1.91
PRE9YGR135W RPB9P27999 122 aa3.11□□□□□ -1.91
PRE9YGR135W RGM1Q00453 211 aa3.11□□□□□ -1.91
PRE9YGR135W EMC6Q12431 108 aa3.11□□□□□ -1.91
PRE9YGR135W YNL146C-AQ3E7Z1 64 aa3.11□□□□□ -1.91
PRE9YGR135W BEM2P39960 2167 aaKnown RBP3.11□□□□□ -1.91
PRE9YGR135W YBR209WP38311 105 aa3.1□□□□□ -1.91
PRE9YGR135W YSY6P38374 65 aa3.1□□□□□ -1.91
PRE9YGR135W ARC15P40518 154 aaRIP-Chip data3.1□□□□□ -1.91not detected
PRE9YGR135W YGL088WP53151 121 aa3.1□□□□□ -1.91
PRE9YGR135W YER135CP40082 130 aa3.09□□□□□ -1.91
PRE9YGR135W YOR034C-AQ3E735 80 aa3.09□□□□□ -1.91
PRE9YGR135W YOR011W-AQ3E807 68 aa3.09□□□□□ -1.91
PRE9YGR135W YLR236CA0A023PZG4 107 aa3.08□□□□□ -1.92
PRE9YGR135W YCR050CP25630 102 aa3.08□□□□□ -1.92
PRE9YGR135W YFR035CP43608 114 aa3.08□□□□□ -1.92
PRE9YGR135W SBH1P52870 82 aa3.08□□□□□ -1.92
PRE9YGR135W YOR020W-AQ3E824 90 aa3.08□□□□□ -1.92
PRE9YGR135W TDA8Q6B2U8 126 aa3.08□□□□□ -1.92
PRE9YGR135W YDR246W-AQ3E763 66 aa3.07□□□□□ -1.92
PRE9YGR135W YJR107C-AP0CT86 78 aa3.06□□□□□ -1.92
PRE9YGR135W YER187WP40102 141 aa3.06□□□□□ -1.92
PRE9YGR135W YMR295CQ03559 197 aa3.06□□□□□ -1.92
PRE9YGR135W IRC21Q04772 201 aa3.06□□□□□ -1.92
PRE9YGR135W YBR219CP38317 127 aa3.05□□□□□ -1.92
PRE9YGR135W GAT4P40569 121 aa3.05□□□□□ -1.92
PRE9YGR135W EDC1P53080 175 aaPredicted RBP3.05□□□□□ -1.92
PRE9YGR135W GIS2P53849 153 aaKnown RBP RIP-Chip data3.05□□□□□ -1.92not detected
PRE9YGR135W MRPS8Q03799 155 aa3.05□□□□□ -1.92
PRE9YGR135W YMR175W-AQ3E766 64 aa3.05□□□□□ -1.92
PRE9YGR135W YLR285C-AQ3E771 56 aa3.05□□□□□ -1.92
PRE9YGR135W YLL006W-AQ3E814 58 aa3.05□□□□□ -1.92
PRE9YGR135W YLR156WP0CE96 114 aa3.04□□□□□ -1.92
PRE9YGR135W YLR159WP0CE97 114 aa3.04□□□□□ -1.92
PRE9YGR135W YLR161WP0CE98 114 aa3.04□□□□□ -1.92
PRE9YGR135W YEL045CP32616 141 aa3.04□□□□□ -1.92
PRE9YGR135W YAR029WP39549 74 aa3.04□□□□□ -1.92
PRE9YGR135W YIR020CP40575 100 aa3.03□□□□□ -1.92
PRE9YGR135W MPC3P53311 146 aa3.03□□□□□ -1.92
PRE9YGR135W ATP18P81450 59 aa3.03□□□□□ -1.92
PRE9YGR135W PMP3P87284 55 aa3.03□□□□□ -1.92
PRE9YGR135W HAL1Q01766 294 aa3.03□□□□□ -1.92
PRE9YGR135W VAM10Q08474 114 aa3.03□□□□□ -1.92
PRE9YGR135W SMD1Q02260 146 aaPredicted RBP3.02□□□□□ -1.93
PRE9YGR135W HOR7Q05827 59 aa3.02□□□□□ -1.93
PRE9YGR135W SEN1Q00416 2231 aaKnown RBP3.02□□□□□ -1.93
PRE9YGR135W BET1P22804 142 aa3.01□□□□□ -1.93
PRE9YGR135W AIM4P38305 123 aaPredicted RBP3.01□□□□□ -1.93
PRE9YGR135W TMC1Q08422 150 aaPredicted RBP3.01□□□□□ -1.93
PRE9YGR135W ATP20Q12233 115 aa3.01□□□□□ -1.93
PRE9YGR135W KTI11Q3E840 82 aa3.01□□□□□ -1.93
PRE9YGR135W KSH1Q8TGJ3 72 aa3.01□□□□□ -1.93
PRE9YGR135W TAR1Q8TGM6 124 aa3.01□□□□□ -1.93
PRE9YGR135W YFR032C-BQ8TGU2 87 aa3.01□□□□□ -1.93
PRE9YGR135W HFA1P32874 2273 aa3.01□□□□□ -1.93
PRE9YGR135W UBC4P15731 148 aa3□□□□□ -1.93
PRE9YGR135W YRA2P36036 203 aaKnown RBP RIP-Chip data3□□□□□ -1.93not detected
PRE9YGR135W RSM19P53733 91 aaPredicted RBP3□□□□□ -1.93
PRE9YGR135W ICY1Q04329 127 aa3□□□□□ -1.93
PRE9YGR135W CSF1Q12150 2958 aa3□□□□□ -1.93
PRE9YGR135W YFR009W-AP0C5M9 85 aa2.99□□□□□ -1.93
PRE9YGR135W RPS11AP0CX47 156 aaKnown RBP2.99□□□□□ -1.93
PRE9YGR135W RPS11BP0CX48 156 aaKnown RBP2.99□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 57.3 ms