RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	YLR363W-A	Q3E747	85 aa		7.42	□□□□□ -1.22
VPS60	YDR486C	YDL241W	Q07738	123 aa		7.41	□□□□□ -1.22
VPS60	YDR486C	ISU2	Q12056	156 aa		7.41	□□□□□ -1.22
VPS60	YDR486C	HAP3	P13434	144 aa		7.4	□□□□□ -1.22
VPS60	YDR486C	ELC1	Q03071	99 aa		7.4	□□□□□ -1.22
VPS60	YDR486C	CWP2	P43497	92 aa		7.39	□□□□□ -1.23
VPS60	YDR486C	CDC43	P18898	376 aa		7.38	□□□□□ -1.23
VPS60	YDR486C	ANB1	P19211	157 aa		7.38	□□□□□ -1.23
VPS60	YDR486C	MID2	P36027	376 aa		7.38	□□□□□ -1.23
VPS60	YDR486C	YML079W	Q03629	201 aa		7.38	□□□□□ -1.23
VPS60	YDR486C	YLL006W-A	Q3E814	58 aa		7.36	□□□□□ -1.23
VPS60	YDR486C	MBF1	O14467	151 aa	Known RBP	7.35	□□□□□ -1.23
VPS60	YDR486C	SNA2	P56508	79 aa		7.35	□□□□□ -1.23
VPS60	YDR486C	CWC27	Q02770	301 aa		7.35	□□□□□ -1.23
VPS60	YDR486C	AQY2	P0CD90	149 aa		7.34	□□□□□ -1.23
VPS60	YDR486C	UBC11	P52492	156 aa		7.34	□□□□□ -1.23
VPS60	YDR486C	SMD1	Q02260	146 aa	Predicted RBP	7.33	□□□□□ -1.24
VPS60	YDR486C	MRP10	O75012	95 aa		7.32	□□□□□ -1.24
VPS60	YDR486C	YDR034C-A	P0C289	58 aa		7.32	□□□□□ -1.24
VPS60	YDR486C	MVB12	P42939	101 aa		7.32	□□□□□ -1.24
VPS60	YDR486C	ABF2	Q02486	183 aa		7.32	□□□□□ -1.24
VPS60	YDR486C	YDR029W	Q12111	104 aa		7.32	□□□□□ -1.24
VPS60	YDR486C	YPL229W	Q99395	206 aa		7.32	□□□□□ -1.24
VPS60	YDR486C	MDN1	Q12019	4910 aa	Known RBP	7.31	□□□□□ -1.24
VPS60	YDR486C	YER181C	P40097	107 aa		7.3	□□□□□ -1.24
VPS60	YDR486C	MHR1	Q06630	226 aa		7.3	□□□□□ -1.24
VPS60	YDR486C	YKL023C-A	Q2V2P3	75 aa		7.3	□□□□□ -1.24
VPS60	YDR486C	PAI3	P01094	68 aa		7.29	□□□□□ -1.24
VPS60	YDR486C	YLR296W	Q05898	108 aa		7.29	□□□□□ -1.24
VPS60	YDR486C	SMP1	P38128	452 aa		7.28	□□□□□ -1.24
VPS60	YDR486C	YIA6	P40556	373 aa		7.28	□□□□□ -1.24
VPS60	YDR486C	HPA2	Q06592	156 aa		7.28	□□□□□ -1.24
VPS60	YDR486C	GAT4	P40569	121 aa		7.27	□□□□□ -1.25
VPS60	YDR486C	YFL019C	P43576	117 aa		7.27	□□□□□ -1.25
VPS60	YDR486C	RGM1	Q00453	211 aa		7.27	□□□□□ -1.25
VPS60	YDR486C	LCL2	Q08045	131 aa		7.27	□□□□□ -1.25
VPS60	YDR486C	STF1	P01098	86 aa		7.26	□□□□□ -1.25
VPS60	YDR486C	YBL039W-B	P0C268	59 aa		7.26	□□□□□ -1.25
VPS60	YDR486C	CPR1	P14832	162 aa	Known RBP	7.26	□□□□□ -1.25
VPS60	YDR486C	RPL29	P05747	59 aa	Predicted RBP	7.25	□□□□□ -1.25
VPS60	YDR486C	YPR170W-B	P0C5R9	85 aa		7.25	□□□□□ -1.25
VPS60	YDR486C	YOR020W-A	Q3E824	90 aa		7.25	□□□□□ -1.25
VPS60	YDR486C	ARO2	P28777	376 aa	Known RBP	7.24	□□□□□ -1.25
VPS60	YDR486C	YHR130C	P38834	111 aa		7.24	□□□□□ -1.25
VPS60	YDR486C	PEX22	P39718	180 aa		7.24	□□□□□ -1.25
VPS60	YDR486C	IGD1	P43598	195 aa		7.24	□□□□□ -1.25
VPS60	YDR486C	POP7	P38291	140 aa		7.23	□□□□□ -1.25
VPS60	YDR486C	UIP3	P39547	235 aa		7.23	□□□□□ -1.25
VPS60	YDR486C	AIM19	P40502	157 aa		7.23	□□□□□ -1.25
VPS60	YDR486C	LSM6	Q06406	86 aa	Known RBP	7.23	□□□□□ -1.25
VPS60	YDR486C	YIL102C-A	Q2V2P5	75 aa		7.23	□□□□□ -1.25
VPS60	YDR486C	YGL041C-B	Q3E750	60 aa		7.22	□□□□□ -1.25
VPS60	YDR486C	NHP2	P32495	156 aa	Predicted RBP	7.21	□□□□□ -1.26
VPS60	YDR486C	YNL198C	P40166	100 aa		7.21	□□□□□ -1.26
VPS60	YDR486C	KNH1	P50112	268 aa		7.21	□□□□□ -1.26
VPS60	YDR486C	EOS1	P53938	366 aa		7.21	□□□□□ -1.26
VPS60	YDR486C	Q0032	Q9ZZX7	96 aa		7.21	□□□□□ -1.26
VPS60	YDR486C	ECM12	O13529	151 aa		7.2	□□□□□ -1.26
VPS60	YDR486C	COX10	P21592	462 aa		7.2	□□□□□ -1.26
VPS60	YDR486C	IRC21	Q04772	201 aa		7.19	□□□□□ -1.26
VPS60	YDR486C	MET32	Q12041	191 aa		7.18	□□□□□ -1.26
VPS60	YDR486C	YNL162W-A	Q3E7A8	72 aa		7.18	□□□□□ -1.26
VPS60	YDR486C	UBC4	P15731	148 aa		7.17	□□□□□ -1.26
VPS60	YDR486C	YOR034C-A	Q3E735	80 aa		7.17	□□□□□ -1.26
VPS60	YDR486C	ICY1	Q04329	127 aa		7.16	□□□□□ -1.26
VPS60	YDR486C	TMA7	Q3E764	64 aa	Known RBP	7.14	□□□□□ -1.27
VPS60	YDR486C	YLR307C-A	Q3E825	87 aa		7.14	□□□□□ -1.27
VPS60	YDR486C	MRPL24	P36525	258 aa	Predicted RBP	7.12	□□□□□ -1.27
VPS60	YDR486C	HUR1	P45820	110 aa		7.12	□□□□□ -1.27
VPS60	YDR486C	HYP2	P23301	157 aa	Known RBP	7.11	□□□□□ -1.27
VPS60	YDR486C	RPL26A	P05743	127 aa	Known RBP	7.1	□□□□□ -1.27
VPS60	YDR486C	YGL193C	P53097	103 aa		7.1	□□□□□ -1.27
VPS60	YDR486C	RPL26B	P53221	127 aa	Known RBP	7.1	□□□□□ -1.27
VPS60	YDR486C	YLR236C	A0A023PZG4	107 aa		7.08	□□□□□ -1.28
VPS60	YDR486C	LCL1	Q02786	101 aa		7.07	□□□□□ -1.28
VPS60	YDR486C	YBR230W-A	Q3E762	66 aa		7.07	□□□□□ -1.28
VPS60	YDR486C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	7.06	□□□□□ -1.28	not detected
VPS60	YDR486C	YNL042W-B	Q3E7Z2	85 aa		7.06	□□□□□ -1.28
VPS60	YDR486C	YJL127C-B	Q3E828	52 aa		7.05	□□□□□ -1.28
VPS60	YDR486C	MSA2	P36157	363 aa		7.04	□□□□□ -1.28
VPS60	YDR486C	YPL257W	Q08974	193 aa		7.04	□□□□□ -1.28
VPS60	YDR486C	FYV5	P25585	152 aa		7.03	□□□□□ -1.28
VPS60	YDR486C	MPC3	P53311	146 aa		7.03	□□□□□ -1.28
VPS60	YDR486C	DUT1	P33317	147 aa		7	□□□□□ -1.29
VPS60	YDR486C	MMS2	P53152	137 aa		7	□□□□□ -1.29
VPS60	YDR486C	YER039C-A	P0CD97	72 aa		6.99	□□□□□ -1.29
VPS60	YDR486C	YLR156W	P0CE96	114 aa		6.99	□□□□□ -1.29
VPS60	YDR486C	YLR159W	P0CE97	114 aa		6.99	□□□□□ -1.29
VPS60	YDR486C	YLR161W	P0CE98	114 aa		6.99	□□□□□ -1.29
VPS60	YDR486C	DSE2	P38844	325 aa		6.99	□□□□□ -1.29
VPS60	YDR486C	DDR2	P89113	61 aa		6.99	□□□□□ -1.29
VPS60	YDR486C	SPT4	P32914	102 aa	Predicted RBP	6.98	□□□□□ -1.29
VPS60	YDR486C	YJR107C-A	P0CT86	78 aa		6.93	□□□□□ -1.3
VPS60	YDR486C	BET1	P22804	142 aa		6.92	□□□□□ -1.3
VPS60	YDR486C	SFT1	P43682	97 aa		6.91	□□□□□ -1.3
VPS60	YDR486C	BSC4	P53841	131 aa		6.91	□□□□□ -1.3
VPS60	YDR486C	YBL112C	Q3E7Y4	105 aa		6.91	□□□□□ -1.3
VPS60	YDR486C	YLR415C	O13578	112 aa		6.9	□□□□□ -1.3
VPS60	YDR486C	EDC2	P40023	145 aa	Predicted RBP	6.9	□□□□□ -1.3
VPS60	YDR486C	RPA12	P32529	125 aa	Known RBP	6.89	□□□□□ -1.31

Retrieved 100 of 5,963 RNA–protein pairs in 108.5 ms