RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 P2RY13Q9BPV8 354 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 EHD2Q9NZN4 543 aa14.81□□□□□ -0.04
LINC00339-211ENST00000641009 LEFTY2O00292 366 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 TCF3P15923 654 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 DRD1P21728 446 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 SPEM2Q0P670 501 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 PUM1Q14671 1186 aaKnown RBP eCLIP14.8□□□□□ -0.04
LINC00339-211ENST00000641009 ZACNQ401N2 412 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 PAQR9Q6ZVX9 377 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 DGLUCYQ7Z3D6 616 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 GPR161Q8N6U8 529 aaKnown RBP14.8□□□□□ -0.04
LINC00339-211ENST00000641009 EZH1Q92800 747 aaPredicted RBP14.8□□□□□ -0.04
LINC00339-211ENST00000641009 MED10Q9BTT4 135 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 SMPD4Q9NXE4 827 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 DLL3Q9NYJ7 618 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 MAPK8IP1Q9UQF2 711 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 GTF3C3Q9Y5Q9 886 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 NCOR2Q9Y618 2525 aa14.8□□□□□ -0.04
LINC00339-211ENST00000641009 NUP205Q92621 2012 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 FAM237AA0A1B0GTK4 181 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 SCAMP3O14828 347 aaKnown RBP14.79□□□□□ -0.04
LINC00339-211ENST00000641009 PFKLP17858 780 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 HOXA6P31267 233 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 CNR2P34972 360 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 PPP3CCP48454 512 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 SLC7A9P82251 487 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 ORC1Q13415 861 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 C1orf220Q5T0J3 134 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 SPOPLQ6IQ16 392 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 SV2AQ7L0J3 742 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.79□□□□□ -0.04
LINC00339-211ENST00000641009 ACOT1Q86TX2 421 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 FAM35AQ86V20 835 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 WDR5BQ86VZ2 330 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 NUP93Q8N1F7 819 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 RPLP0P6Q8NHW5 317 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 SCAMP5Q8TAC9 235 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 TMC2Q8TDI7 906 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 CD101Q93033 1021 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 SLITRK1Q96PX8 696 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 GOLPH3LQ9H4A5 285 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 GDPD2Q9HCC8 539 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.79□□□□□ -0.04
LINC00339-211ENST00000641009 SLC8A2Q9UPR5 921 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 FRMD4BQ9Y2L6 1034 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 CPQQ9Y646 472 aa14.79□□□□□ -0.04
LINC00339-211ENST00000641009 THADAQ6YHU6 1953 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 CALUO43852 315 aaPredicted RBP14.78□□□□□ -0.04
LINC00339-211ENST00000641009 ATG13O75143 517 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 RHOBTB3O94955 611 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 OLFM2O95897 454 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 OAS1P00973 400 aaKnown RBP14.78□□□□□ -0.04
LINC00339-211ENST00000641009 RETP07949 1114 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 YWHAQP27348 245 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 DPYDQ12882 1025 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 SGSM1Q2NKQ1 1148 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 CEP68Q76N32 757 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 FILIP1Q7Z7B0 1213 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 FBXO32Q969P5 355 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 EXOC4Q96A65 974 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 TNIP3Q96KP6 325 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 HMGXB4Q9UGU5 601 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 TRAF3IP3Q9Y228 551 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 ATP8B3O60423 1300 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 ABCA7Q8IZY2 2146 aa14.78□□□□□ -0.04
LINC00339-211ENST00000641009 TNFRSF10BO14763 440 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 IKBKBO14920 756 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 RTN3O95197 1032 aaPredicted RBP14.77□□□□□ -0.04
LINC00339-211ENST00000641009 NFATC1O95644 943 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 ASS1P00966 412 aaKnown RBP14.77□□□□□ -0.04
LINC00339-211ENST00000641009 HLA-DRAP01903 254 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 P4HA1P13674 534 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 CCDC130P13994 396 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 PIK3CAP42336 1068 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 VAMP7P51809 220 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 NDST1P52848 882 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 SLC5A3P53794 718 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 LMNB2Q03252 620 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 NR1H3Q13133 447 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 GAB4Q2WGN9 574 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 FBXO43Q4G163 708 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 KRBA2Q6ZNG9 492 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 FUKQ8N0W3 1084 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 FAM160A2Q8N612 972 aaPredicted RBP14.77□□□□□ -0.04
LINC00339-211ENST00000641009 CCDC47Q96A33 483 aaKnown RBP14.77□□□□□ -0.04
LINC00339-211ENST00000641009 SMARCD1Q96GM5 515 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 HHIPQ96QV1 700 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 SCAND2PQ9GZW5 306 aaPredicted RBP14.77□□□□□ -0.04
LINC00339-211ENST00000641009 DMAP1Q9NPF5 467 aaPredicted RBP14.77□□□□□ -0.04
LINC00339-211ENST00000641009 KRT82Q9NSB4 513 aa14.77□□□□□ -0.04
LINC00339-211ENST00000641009 CHORDC1Q9UHD1 332 aaPredicted RBP14.77□□□□□ -0.04
LINC00339-211ENST00000641009 A0A1W2PQ27 194 aa14.76□□□□□ -0.05
LINC00339-211ENST00000641009 A0A1W2PQ64 194 aa14.76□□□□□ -0.05
LINC00339-211ENST00000641009 A0A1W2PQD8 194 aa14.76□□□□□ -0.05
LINC00339-211ENST00000641009 MED19A0JLT2 244 aaPredicted RBP14.76□□□□□ -0.05
LINC00339-211ENST00000641009 AP1G2O75843 785 aa14.76□□□□□ -0.05
LINC00339-211ENST00000641009 AKAP3O75969 853 aa14.76□□□□□ -0.05
LINC00339-211ENST00000641009 BEST1O76090 585 aa14.76□□□□□ -0.05
LINC00339-211ENST00000641009 CYP17A1P05093 508 aa14.76□□□□□ -0.05
LINC00339-211ENST00000641009 TRIM49P0CI25 452 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms