RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 LMAN1P49257 510 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 GLUD2P49448 558 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 VSNL1P62760 191 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 SLC39A12Q504Y0 691 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 C2CD6Q53TS8 623 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 KIAA1841Q6NSI8 718 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 SMOQ99835 787 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 MRPL47Q9HD33 250 aaKnown RBP14.89□□□□□ -0.03
CLN3-242ENST00000635958 PARVAQ9NVD7 372 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 VPS18Q9P253 973 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 COG5Q9UP83 839 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 LZTS1Q9Y250 596 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 PCDHGC5Q9Y5F6 944 aa14.89□□□□□ -0.03
CLN3-242ENST00000635958 NLRC5Q86WI3 1866 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 PTPRDP23468 1912 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 FAM170AA1A519 330 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 C5orf67F2Z3F1 127 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 AP1G2O75843 785 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 ERBB2P04626 1255 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 OR4Q2P0C623 313 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 RHOXF2BP0C7M4 288 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 MAGEA11P43364 429 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 RABGGTBP53611 331 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 MAMLD1Q13495 774 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 PSMD5Q16401 504 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 PPP1R15BQ5SWA1 713 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 PRSS55Q6UWB4 352 aaPredicted RBP14.88□□□□□ -0.03
CLN3-242ENST00000635958 ZNF572Q7Z3I7 529 aaPredicted RBP14.88□□□□□ -0.03
CLN3-242ENST00000635958 PIGZQ86VD9 579 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 XYLT1Q86Y38 959 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 SPATA2LQ8IUW3 424 aaPredicted RBP14.88□□□□□ -0.03
CLN3-242ENST00000635958 VPS52Q8N1B4 723 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 KLHL23Q8NBE8 558 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 C3orf20Q8ND61 904 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 FBXO22Q8NEZ5 403 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 ZMIZ2Q8NF64 920 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 TRIM58Q8NG06 486 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 TPCN2Q8NHX9 752 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 IPO4Q8TEX9 1081 aaKnown RBP14.88□□□□□ -0.03
CLN3-242ENST00000635958 C2orf15Q8WU43 125 aaKnown RBP14.88□□□□□ -0.03
CLN3-242ENST00000635958 MCRS1Q96EZ8 462 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 RHOXF2Q9BQY4 288 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 UBE2OQ9C0C9 1292 aaKnown RBP14.88□□□□□ -0.03
CLN3-242ENST00000635958 PNPLA8Q9NP80 782 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 OSGEPQ9NPF4 335 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 KRT82Q9NSB4 513 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 TMEM30AQ9NV96 361 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 CTTNBP2NLQ9P2B4 639 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 TJP2Q9UDY2 1190 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 PCDHA11Q9Y5I1 949 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 SCINQ9Y6U3 715 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 RANBP2P49792 3224 aaKnown RBP14.88□□□□□ -0.03
CLN3-242ENST00000635958 MYH10P35580 1976 aa14.88□□□□□ -0.03
CLN3-242ENST00000635958 ATMINO43313 823 aaPredicted RBP14.87□□□□□ -0.03
CLN3-242ENST00000635958 BUB1O43683 1085 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 MOCS3O95396 460 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 RB1P06400 928 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 BDNFP23560 247 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 BMP8BP34820 402 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 NOP2P46087 812 aaKnown RBP14.87□□□□□ -0.03
CLN3-242ENST00000635958 CACNA2D1P54289 1103 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 FAM109BQ6ICB4 259 aaPredicted RBP14.87□□□□□ -0.03
CLN3-242ENST00000635958 VSTM1Q6UX27 236 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 SLFN11Q7Z7L1 901 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 ZDHHC17Q8IUH5 632 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 CLSTN3Q9BQT9 956 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 NUP85Q9BW27 656 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 FAM107BQ9H098 131 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 RXFP1Q9HBX9 757 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 FNIP2Q9P278 1114 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 PCDHB5Q9Y5E4 795 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 CAPN6Q9Y6Q1 641 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 SIGLEC16A6NMB1 481 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 GRXCR1A8MXD5 290 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 HHLA1C9JL84 531 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 E5RJQ4 531 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 CTSAP10619 480 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 SCNN1AP37088 669 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 RGS7P49802 495 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 MAP3K7CLP57077 242 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 TAP1Q03518 808 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 RAB41Q5JT25 222 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 CYP4A22Q5TCH4 519 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 MMGT1Q8N4V1 131 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 LRRC57Q8N9N7 239 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 SPPL2BQ8TCT7 592 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 KCNK16Q96T55 309 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 ZBP1Q9H171 429 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 SYNCQ9H7C4 482 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 DMAP1Q9NPF5 467 aaPredicted RBP14.87□□□□□ -0.03
CLN3-242ENST00000635958 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.87□□□□□ -0.03
CLN3-242ENST00000635958 RNF14Q9UBS8 474 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 CHORDC1Q9UHD1 332 aaPredicted RBP14.87□□□□□ -0.03
CLN3-242ENST00000635958 SSX2IPQ9Y2D8 614 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 JRKLQ9Y4A0 524 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 CDY1Q9Y6F8 540 aa14.87□□□□□ -0.03
CLN3-242ENST00000635958 GRID2IPA4D2P6 1211 aa14.86□□□□□ -0.03
CLN3-242ENST00000635958 ADAM12O43184 909 aa14.86□□□□□ -0.03
CLN3-242ENST00000635958 PAPSS1O43252 624 aaPredicted RBP14.86□□□□□ -0.03
CLN3-242ENST00000635958 URODP06132 367 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms