RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ZNF830Q96NB3 372 aaPredicted RBP13.44□□□□□ -0.26
PNKP-217ENST00000625216 CRACR2AQ9BSW2 395 aa13.44□□□□□ -0.26
PNKP-217ENST00000625216 SLC46A2Q9BY10 475 aa13.44□□□□□ -0.26
PNKP-217ENST00000625216 XYLT2Q9H1B5 865 aa13.44□□□□□ -0.26
PNKP-217ENST00000625216 GANQ9H2C0 597 aa13.44□□□□□ -0.26
PNKP-217ENST00000625216 SEMA4AQ9H3S1 761 aa13.44□□□□□ -0.26
PNKP-217ENST00000625216 EHD2Q9NZN4 543 aa13.44□□□□□ -0.26
PNKP-217ENST00000625216 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.44□□□□□ -0.264e-6■■□□□ 12.6
PNKP-217ENST00000625216 GTPBP10A4D1E9 387 aaKnown RBP13.43□□□□□ -0.26
PNKP-217ENST00000625216 SLC38A8A6NNN8 435 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 MFAP3LO75121 409 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 ATP2C2O75185 946 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 CD72P21854 359 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 TARSP26639 723 aaKnown RBP13.43□□□□□ -0.26
PNKP-217ENST00000625216 CASP14P31944 242 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 AVPR1AP37288 418 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 GCLMP48507 274 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 GPR15P49685 360 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 MXI1P50539 228 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 APBA1Q02410 837 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 NCOA4Q13772 614 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 SGSM1Q2NKQ1 1148 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 MAMSTRQ6ZN01 415 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 TMEM150AQ86TG1 271 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 SCN4BQ8IWT1 228 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 TC2NQ8N9U0 490 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 OR6B3Q8NGW1 331 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 FAM3CQ92520 227 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 TAF4BQ92750 862 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 PCMTD1Q96MG8 357 aaPredicted RBP13.43□□□□□ -0.26
PNKP-217ENST00000625216 MRPL45Q9BRJ2 306 aaKnown RBP13.43□□□□□ -0.26
PNKP-217ENST00000625216 IER2Q9BTL4 223 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 KIF9Q9HAQ2 790 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 SIX2Q9NPC8 291 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 CRTAC1Q9NQ79 661 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 NXF1Q9UBU9 619 aaKnown RBP13.43□□□□□ -0.26
PNKP-217ENST00000625216 FBXO4Q9UKT5 387 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 MAGED2Q9UNF1 606 aaPredicted RBP13.43□□□□□ -0.26
PNKP-217ENST00000625216 MTF2Q9Y483 593 aaPredicted RBP13.43□□□□□ -0.26
PNKP-217ENST00000625216 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.43□□□□□ -0.26
PNKP-217ENST00000625216 PIAS3Q9Y6X2 628 aa13.43□□□□□ -0.26
PNKP-217ENST00000625216 SHISA7A6NL88 538 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 A8MXQ7 604 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 TRIM66O15016 1216 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 LAMTOR5O43504 91 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 HCRTO43612 131 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 GFRA3O60609 400 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 LRRN2O75325 713 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 P4HA1P13674 534 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 PTPN1P18031 435 aaKnown RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 SLC9A1P19634 815 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 BDNFP23560 247 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 PON1P27169 355 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 GRIK1P39086 918 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 KPNA1P52294 538 aaPredicted RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 ADKP55263 362 aaKnown RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 PSMC1P62191 440 aaKnown RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 CYP27A1Q02318 531 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 FZD5Q13467 585 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 ZNF268Q14587 947 aaPredicted RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 ZNF699Q32M78 642 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 ZNF528Q3MIS6 628 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 ZACNQ401N2 412 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 HS1BP3Q53T59 392 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 FIGNQ5HY92 759 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 ZNF667Q5HYK9 610 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 SDHAF4Q5VUM1 108 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 TDRD10Q5VZ19 366 aaKnown RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 GBP6Q6ZN66 633 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 ZNF687Q8N1G0 1237 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 MAB21L3Q8N8X9 362 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 CPLX3Q8WVH0 158 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 NKD2Q969F2 451 aaPredicted RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 MYLPFQ96A32 169 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 TRIM44Q96DX7 344 aaPredicted RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 PCED1BQ96HM7 432 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 C8orf48Q96LL4 319 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 LRRC3BQ96PB8 259 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 FAM207AQ9NSI2 230 aaPredicted RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 TDP1Q9NUW8 608 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 SPATA6Q9NWH7 488 aaPredicted RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 GCNT4Q9P109 453 aa13.42□□□□□ -0.26
PNKP-217ENST00000625216 AJAP1Q9UKB5 411 aaPredicted RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 ZFHX2Q9C0A1 2572 aaPredicted RBP13.42□□□□□ -0.26
PNKP-217ENST00000625216 NCANO14594 1321 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 TSC2P49815 1807 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 A0A1W2PQJ5 194 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 AKR1B15C9JRZ8 316 aaPredicted RBP13.41□□□□□ -0.26
PNKP-217ENST00000625216 PRAMEF12O95522 483 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 SP9P0CG40 484 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 PFKLP17858 780 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 TRIM21P19474 475 aaKnown RBP13.41□□□□□ -0.26
PNKP-217ENST00000625216 ANXA13P27216 316 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 PPP3CCP48454 512 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 PDE6CP51160 858 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 CCZ1BP86790 482 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 CCZ1P86791 482 aaPredicted RBP13.41□□□□□ -0.26
PNKP-217ENST00000625216 EXOC3L4Q17RC7 722 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 CCDC142Q17RM4 750 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 MDH1BQ5I0G3 518 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms