RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 PLEKHO2Q8TD55 490 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 ZNF669Q96BR6 464 aaPredicted RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 XPNPEP1Q9NQW7 623 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 GTSE1Q9NYZ3 720 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 TAF1P21675 1872 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 KLRG2A4D1S0 409 aaPredicted RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 SPATA31C2B4DYI2 1134 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 E5RJQ4 531 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 SPATA24Q86W54 205 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 PHF13Q86YI8 300 aaPredicted RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 PPP1R13LQ8WUF5 828 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 A0A0B4J269 797 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 KDELR1P24390 212 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 PEX5P50542 639 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 CACNB2Q08289 660 aaPredicted RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 SLC20A2Q08357 652 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 CUL3Q13618 768 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 GJC2Q5T442 439 aaPredicted RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 ZDHHC24Q6UX98 284 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 NPNTQ6UXI9 565 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 ABHD15Q6UXT9 468 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 SLC26A11Q86WA9 606 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 REPS2Q8NFH8 660 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 ST6GALNAC4Q9H4F1 302 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 PFDN4Q9NQP4 134 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 SLC12A6Q9UHW9 1150 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 PLCH1Q4KWH8 1693 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 RPTORQ8N122 1335 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 SPDYE16A6NNV3 312 aaPredicted RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 ASS1P00966 412 aaKnown RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 NOVP48745 357 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 HIRAP54198 1017 aaPredicted RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 FAAP100Q0VG06 881 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 FSCBQ5H9T9 825 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 PRPF39Q86UA1 669 aaKnown RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 ERO1BQ86YB8 467 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 ZNF75CPQ92670 426 aaPredicted RBP13.35□□□□□ -0.27
MSH6-215ENST00000622629 KAT2BQ92831 832 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 MTBPQ96DY7 904 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 GGA2Q9UJY4 613 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 TRIM33Q9UPN9 1127 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 PDE4DIPQ5VU43 2346 aa13.35□□□□□ -0.27
MSH6-215ENST00000622629 H3BRB1 525 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 DFFAO00273 331 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 DNM1LO00429 736 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 DHX15O43143 795 aaKnown RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 NFICP08651 508 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 KCNA2P16389 499 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 MMP8P22894 467 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 RPL22P35268 128 aaKnown RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 SERPINB9P50453 376 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 AP2B1P63010 937 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 MMRN1Q13201 1228 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 ZNF268Q14587 947 aaPredicted RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 GPRC5AQ8NFJ5 357 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 PIP4K2CQ8TBX8 421 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 Q9H521 79 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 TUT1Q9H6E5 874 aaKnown RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 ARHGAP28Q9P2N2 729 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 IPO11Q9UI26 975 aaKnown RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 RPS6KL1Q9Y6S9 549 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 N4BP2Q86UW6 1770 aaPredicted RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 M0QYT0 321 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 EDIL3O43854 480 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 KBTBD12Q3ZCT8 623 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 FASTKD1Q53R41 847 aaKnown RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 WNK4Q96J92 1243 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 MYLK2Q9H1R3 596 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 SPATS2LQ9NUQ6 558 aaKnown RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.34□□□□□ -0.273e-10■■■■■ 28.1
MSH6-215ENST00000622629 GRID1Q9ULK0 1009 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 EEF2KO00418 725 aaKnown RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 HNRNPCL1O60812 293 aaKnown RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 HIC1Q14526 733 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 MAP1SQ66K74 1059 aaPredicted RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 OR6P1Q8NGX9 317 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 JOSD2Q8TAC2 188 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 VPS39Q96JC1 886 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 APOL2Q9BQE5 337 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 TRIM4Q9C037 500 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 ASCC2Q9H1I8 757 aaPredicted RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 TMEM134Q9H6X4 195 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 ZDHHC18Q9NUE0 388 aa13.34□□□□□ -0.27
MSH6-215ENST00000622629 BARX2Q9UMQ3 279 aaPredicted RBP13.34□□□□□ -0.27
MSH6-215ENST00000622629 C4BPAP04003 597 aaKnown RBP13.33□□□□□ -0.27
MSH6-215ENST00000622629 RBL1P28749 1068 aa13.33□□□□□ -0.27
MSH6-215ENST00000622629 MTFR1Q15390 333 aa13.33□□□□□ -0.27
MSH6-215ENST00000622629 TFB1MQ8WVM0 346 aaKnown RBP13.33□□□□□ -0.27
MSH6-215ENST00000622629 DNAJC9Q8WXX5 260 aa13.33□□□□□ -0.27
MSH6-215ENST00000622629 OSMRQ99650 979 aa13.33□□□□□ -0.27
MSH6-215ENST00000622629 PLEKHA5Q9HAU0 1116 aa13.33□□□□□ -0.27
MSH6-215ENST00000622629 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.33□□□□□ -0.272e-7■■■■□ 21.4
MSH6-215ENST00000622629 AP4E1Q9UPM8 1137 aa13.33□□□□□ -0.27
MSH6-215ENST00000622629 MROH7Q68CQ1 1323 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 A0A1W2PPM1 405 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 TMEM191CA6NGB0 347 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 ADM5C9JUS6 153 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 EPHB2P29323 1055 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 RTP1P59025 263 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms