RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 VIMP08670 466 aaKnown RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 GABRB2P47870 512 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 CTCFP49711 727 aaPredicted RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 ZNF143P52747 638 aaPredicted RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 COPS2P61201 443 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 CAV1Q03135 178 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 LMNB2Q03252 620 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 TMED2Q15363 201 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 TAF1CQ15572 869 aaPredicted RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 CA9Q16790 459 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 CCDC14Q49A88 953 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 POLNQ7Z5Q5 900 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 LRRC34Q8IZ02 419 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 MICALL1Q8N3F8 863 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 ARRDC4Q8NCT1 418 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 ZFP42Q96MM3 310 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 MAK16Q9BXY0 300 aaKnown RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 FAM129AQ9BZQ8 928 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 CNOT10Q9H9A5 744 aaKnown RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 WDR35Q9P2L0 1181 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 SMIM28A0A1B0GU29 152 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 ITGAVP06756 1048 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 ZNF865P0CJ78 1059 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 RBP3P10745 1247 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 RPL22P35268 128 aaKnown RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 ZNF157P51786 506 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 AFF1P51825 1210 aaKnown RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 EIF3EP60228 445 aaKnown RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 BASP1P80723 227 aaKnown RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 MAP2K5Q13163 448 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 SNX17Q15036 470 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 SPRED3Q2MJR0 410 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 FNBP1LQ5T0N5 605 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 RNASEH2BQ5TBB1 312 aaKnown RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 C9orf57Q5W0N0 161 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 CYP4V2Q6ZWL3 525 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 FNIP1Q8TF40 1166 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 DYDC1Q8WWB3 177 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 CHMP6Q96FZ7 201 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 SEC16BQ96JE7 1060 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 ASNSD1Q9NWL6 643 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 EXOC1LA0A1B0GW35 172 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 MYADML2A6NDP7 307 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 RRN3P2A6NIE6 340 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 SLC15A5A6NIM6 579 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 PAPSS1O43252 624 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 PRPSAP2O60256 369 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 SPAG7O75391 227 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 HOXD8P13378 290 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 BRAFP15056 766 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 ACAT1P24752 427 aaKnown RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 SSTR1P30872 391 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 DCAF4L1Q3SXM0 396 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 TNFAIP8L3Q5GJ75 292 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 VSTM1Q6UX27 236 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 BBS12Q6ZW61 710 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 CMASQ8NFW8 434 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 FAM172AQ8WUF8 416 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 NKD2Q969F2 451 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 TMEM109Q9BVC6 243 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 ROPN1BQ9BZX4 212 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 ROPN1Q9HAT0 212 aaPredicted RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 GGT7Q9UJ14 662 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 DRG1Q9Y295 367 aaKnown RBP11.12□□□□□ -0.63
CUX1-221ENST00000622516 NR2E3Q9Y5X4 410 aa11.12□□□□□ -0.63
CUX1-221ENST00000622516 SCN4AP35499 1836 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 DRD4P21917 467 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 EFTUD2Q15029 972 aaKnown RBP eCLIP11.11□□□□□ -0.638e-8■■■■□ 20.9
CUX1-221ENST00000622516 ZBTB6Q15916 424 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 FAXCQ5TGI0 409 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 MFSD5Q6N075 450 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 DRICH1Q6PGQ1 229 aaPredicted RBP11.11□□□□□ -0.63
CUX1-221ENST00000622516 OLFML1Q6UWY5 402 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 OTUD6BQ8N6M0 293 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 BBOF1Q8ND07 529 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 BEST2Q8NFU1 509 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 CPT1BQ92523 772 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 KHSRPQ92945 711 aaKnown RBP eCLIP11.11□□□□□ -0.633e-7■■■■□ 19.9
CUX1-221ENST00000622516 CABS1Q96KC9 395 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 SERPINB12Q96P63 405 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 PAIP2Q9BPZ3 127 aaKnown RBP11.11□□□□□ -0.63
CUX1-221ENST00000622516 CNPY3Q9BT09 278 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 SYNJ2BP-COX16A0A087WUM0 186 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 CTSHP09668 335 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 GNL1P36915 607 aaPredicted RBP11.11□□□□□ -0.63
CUX1-221ENST00000622516 PSEN2P49810 448 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 DPYSL3Q14195 570 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 KRT81Q14533 505 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 MORN1Q5T089 497 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 DARS2Q6PI48 645 aaKnown RBP11.11□□□□□ -0.63
CUX1-221ENST00000622516 TAOK1Q7L7X3 1001 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 SLC2A14Q8TDB8 520 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 PRCCQ92733 491 aaPredicted RBP11.11□□□□□ -0.63
CUX1-221ENST00000622516 ZNF317Q96PQ6 595 aaPredicted RBP11.11□□□□□ -0.63
CUX1-221ENST00000622516 ELAC2Q9BQ52 826 aaKnown RBP11.11□□□□□ -0.63
CUX1-221ENST00000622516 NMRK2Q9NPI5 230 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 COX16Q9P0S2 106 aa11.11□□□□□ -0.63
CUX1-221ENST00000622516 CLDN5O00501 218 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 HGSO14964 777 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 AVILO75366 819 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms