RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 DCLK2Q8N568 766 aa18.23■□□□□ 0.51
HMGN3-203ENST00000620514 SCAMP5Q8TAC9 235 aa18.23■□□□□ 0.51
HMGN3-203ENST00000620514 CCDC34Q96HJ3 373 aa18.23■□□□□ 0.51
HMGN3-203ENST00000620514 LINC00597Q9H2U6 94 aa18.23■□□□□ 0.51
HMGN3-203ENST00000620514 FBRSL1Q9HCM7 1045 aaKnown RBP18.23■□□□□ 0.51
HMGN3-203ENST00000620514 EHD2Q9NZN4 543 aa18.23■□□□□ 0.51
HMGN3-203ENST00000620514 GPR179Q6PRD1 2367 aa18.23■□□□□ 0.51
HMGN3-203ENST00000620514 ATP8B3O60423 1300 aa18.23■□□□□ 0.51
HMGN3-203ENST00000620514 CFAP54Q96N23 3096 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 TNFRSF10BO14763 440 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 AP1G2O75843 785 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 BEST1O76090 585 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 TCF3P15923 654 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 YWHAQP27348 245 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 GJA4P35212 333 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 PRCPP42785 496 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 EML3Q32P44 896 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 EDRF1Q3B7T1 1238 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 TMEM196Q5HYL7 178 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 CRYBG2Q8N1P7 616 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 C12orf29Q8N999 325 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 ZMIZ2Q8NF64 920 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 SLC2A14Q8TDB8 520 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 FBXO32Q969P5 355 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 SMARCD1Q96GM5 515 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 SLITRK1Q96PX8 696 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 TWNKQ96RR1 684 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 SMOQ99835 787 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 FAM126AQ9BYI3 521 aaPredicted RBP18.22■□□□□ 0.51
HMGN3-203ENST00000620514 ECT2Q9H8V3 914 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 DMAP1Q9NPF5 467 aaPredicted RBP18.22■□□□□ 0.51
HMGN3-203ENST00000620514 KRT82Q9NSB4 513 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 FAM49BQ9NUQ9 324 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 CPQQ9Y646 472 aa18.22■□□□□ 0.51
HMGN3-203ENST00000620514 HELZP42694 1942 aaKnown RBP18.21■□□□□ 0.51
HMGN3-203ENST00000620514 OTOGLQ3ZCN5 2332 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 K7ESF4 209 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 LEFTY2O00292 366 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 TRDMT1O14717 391 aaKnown RBP18.21■□□□□ 0.51
HMGN3-203ENST00000620514 OLFM2O95897 454 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 OAS1P00973 400 aaKnown RBP18.21■□□□□ 0.51
HMGN3-203ENST00000620514 EGFP01133 1207 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 PFKLP17858 780 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 PPP3CCP48454 512 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 PDE6CP51160 858 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 GALK1P51570 392 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 SLC5A3P53794 718 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 SLC7A9P82251 487 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 PPP2R5DQ14738 602 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 UNC93AQ86WB7 457 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 CPA6Q8N4T0 437 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 HINFPQ9BQA5 517 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 TMEM8AQ9HCN3 771 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 RMND1Q9NWS8 449 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 SMPD4Q9NXE4 827 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 CHORDC1Q9UHD1 332 aaPredicted RBP18.21■□□□□ 0.51
HMGN3-203ENST00000620514 PCDHA5Q9Y5H7 936 aa18.21■□□□□ 0.51
HMGN3-203ENST00000620514 CHURC1-FNTBB4DL54 471 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 SCAMP3O14828 347 aaKnown RBP18.2■□□□□ 0.5
HMGN3-203ENST00000620514 RTN3O95197 1032 aaPredicted RBP18.2■□□□□ 0.5
HMGN3-203ENST00000620514 ADORA2BP29275 332 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 FNTBP49356 437 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 PMS1P54277 932 aaKnown RBP18.2■□□□□ 0.5
HMGN3-203ENST00000620514 NRLP54845 237 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 MCCD1P59942 119 aaPredicted RBP18.2■□□□□ 0.5
HMGN3-203ENST00000620514 ENPEPQ07075 957 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 INCA1Q0VD86 236 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 GRSF1Q12849 480 aaKnown RBP eCLIP18.2■□□□□ 0.5
HMGN3-203ENST00000620514 ZNF658Q5TYW1 1059 aaPredicted RBP18.2■□□□□ 0.5
HMGN3-203ENST00000620514 SYNPOQ8N3V7 929 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 RUBCNQ92622 972 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 SEMA4DQ92854 862 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 ATP2A3Q93084 1043 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 GSDMAQ96QA5 445 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 IMPG2Q9BZV3 1241 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 NIF3L1Q9GZT8 377 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 EPC1Q9H2F5 836 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 IL37Q9NZH6 218 aa18.2■□□□□ 0.5
HMGN3-203ENST00000620514 SMG5Q9UPR3 1016 aaKnown RBP18.2■□□□□ 0.5
HMGN3-203ENST00000620514 CETN3O15182 167 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 PAPSS2O95340 614 aaPredicted RBP18.19■□□□□ 0.5
HMGN3-203ENST00000620514 CD58P19256 250 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 MAP3K7CLP57077 242 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 KRT39Q6A163 491 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 HEATR6Q6AI08 1181 aaKnown RBP18.19■□□□□ 0.5
HMGN3-203ENST00000620514 ANKRD40Q6AI12 368 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 KIAA2013Q8IYS2 634 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 SPATA20Q8TB22 786 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 WHAMMQ8TF30 809 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 SMARCE1Q969G3 411 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 P2RY13Q9BPV8 354 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 CYP3A43Q9HB55 503 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 CSNK1G1Q9HCP0 422 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 POLR3BQ9NW08 1133 aaPredicted RBP18.19■□□□□ 0.5
HMGN3-203ENST00000620514 GMIPQ9P107 970 aa18.19■□□□□ 0.5
HMGN3-203ENST00000620514 TRIM49BA6NDI0 452 aa18.18■□□□□ 0.5
HMGN3-203ENST00000620514 COCHO43405 550 aa18.18■□□□□ 0.5
HMGN3-203ENST00000620514 RNF40O75150 1001 aa18.18■□□□□ 0.5
HMGN3-203ENST00000620514 SMC2O95347 1197 aa18.18■□□□□ 0.5
HMGN3-203ENST00000620514 EPB41P11171 864 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms