RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RTL10Q7L3V2 364 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 SLC47A2Q86VL8 602 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 SHC3Q92529 594 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 ASB16Q96NS5 453 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 RNF38Q9H0F5 515 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 C11orf16Q9NQ32 467 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 PLCB1Q9NQ66 1216 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 NR2E1Q9Y466 385 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 MYO18AQ92614 2054 aaKnown RBP14.27□□□□□ -0.12
LINC00540-202ENST00000616974 COL4A2P08572 1712 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 PDGFBP01127 241 aaPredicted RBP14.27□□□□□ -0.13
LINC00540-202ENST00000616974 CSH1P0DML2 217 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 CSH2P0DML3 217 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 NPR3P17342 541 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 RGS7P49802 495 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 UBXN1Q04323 297 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 TAF12Q16514 161 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 PKDCCQ504Y2 493 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 CYP26C1Q6V0L0 522 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 ARID3BQ8IVW6 561 aaPredicted RBP14.27□□□□□ -0.13
LINC00540-202ENST00000616974 ACSF2Q96CM8 615 aaPredicted RBP14.27□□□□□ -0.13
LINC00540-202ENST00000616974 ZFYVE19Q96K21 471 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 SPATA17Q96L03 361 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 MYRFLQ96LU7 910 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 DUSP16Q9BY84 665 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 NMUR1Q9HB89 426 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 TRPC7Q9HCX4 862 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 AVENQ9NQS1 362 aaPredicted RBP14.27□□□□□ -0.13
LINC00540-202ENST00000616974 GMIPQ9P107 970 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 CNTN6Q9UQ52 1028 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 ASB3Q9Y575 518 aa14.27□□□□□ -0.13
LINC00540-202ENST00000616974 ANHXE9PGG2 379 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 TNFRSF10AO00220 468 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 LETM1O95202 739 aaPredicted RBP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 TBX18O95935 607 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 ABL1P00519 1130 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 DRAP1Q14919 205 aaPredicted RBP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 SGO2Q562F6 1265 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 LRSAM1Q6UWE0 723 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 ITIH5Q86UX2 942 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 PIGZQ86VD9 579 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 GAS2L3Q86XJ1 694 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 ZDHHC14Q8IZN3 488 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 SLC44A3Q8N4M1 653 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 CLEC4CQ8WTT0 213 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 NAT10Q9H0A0 1025 aaKnown RBP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 CCSER2Q9H7U1 834 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 TRIM66O15016 1216 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 AP5Z1O43299 807 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 MICAL2O94851 1124 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 PTMSP20962 102 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 ANXA13P27216 316 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 POLR2FP61218 127 aaKnown RBP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 ARHGAP17Q68EM7 881 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 PMF1Q6P1K2 205 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 DENND1BQ6P3S1 775 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 VITQ6UXI7 678 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 PASD1Q8IV76 773 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 NUP93Q8N1F7 819 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 ARL14EPQ8N8R7 260 aaPredicted RBP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 SECISBP2LQ93073 1101 aaKnown RBP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 WBP2Q969T9 261 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 ASIC4Q96FT7 647 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 TRMT2BQ96GJ1 504 aaKnown RBP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 FAXDC2Q96IV6 333 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 TTLL2Q9BWV7 592 aa14.26□□□□□ -0.13
LINC00540-202ENST00000616974 RTN4Q9NQC3 1192 aaKnown RBP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.26□□□□□ -0.13
LINC00540-202ENST00000616974 DNAH14Q0VDD8 3507 aa14.25□□□□□ -0.13
LINC00540-202ENST00000616974 ZNF840PA6NDX5 716 aa14.25□□□□□ -0.13
LINC00540-202ENST00000616974 MDM4O15151 490 aa14.25□□□□□ -0.13
LINC00540-202ENST00000616974 USP17L7P0C7H9 530 aa14.25□□□□□ -0.13
LINC00540-202ENST00000616974 GPC5P78333 572 aa14.25□□□□□ -0.13
LINC00540-202ENST00000616974 BHLHA9Q7RTU4 235 aa14.25□□□□□ -0.13
LINC00540-202ENST00000616974 PIWIL1Q96J94 861 aaKnown RBP14.25□□□□□ -0.13
LINC00540-202ENST00000616974 M0QYV0 167 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 MFAP3P55082 362 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 E4F1Q66K89 784 aaPredicted RBP14.24□□□□□ -0.13
LINC00540-202ENST00000616974 ANKRD52Q8NB46 1076 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 ZNF606Q8WXB4 792 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 USP13Q92995 863 aaPredicted RBP14.24□□□□□ -0.13
LINC00540-202ENST00000616974 FBXO32Q969P5 355 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 IL37Q9NZH6 218 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 A0A1B0GTH6 734 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 F8VZ95 297 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 VDRP11473 427 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 GNA15P30679 374 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 KIF11P52732 1056 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 C2CD6Q53TS8 623 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 LCLAT1Q6UWP7 414 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 HFE2Q6ZVN8 426 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 SCD5Q86SK9 330 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 CMTM8Q8IZV2 173 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 WDTC1Q8N5D0 677 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 TTC8Q8TAM2 541 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 SLC20A1Q8WUM9 679 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 SMARCD2Q92925 531 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 SMPD4Q9NXE4 827 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 GDE1Q9NZC3 331 aa14.24□□□□□ -0.13
LINC00540-202ENST00000616974 SMTNL1A8MU46 457 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms