RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 USP46P62068 366 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 DPYDQ12882 1025 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 NR1H3Q13133 447 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 RPLP0P6Q8NHW5 317 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 ACDQ96AP0 544 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 ZC3H10Q96K80 434 aaKnown RBP20.2■□□□□ 0.82
CDX1-202ENST00000616154 HHIPQ96QV1 700 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 MRPL45Q9BRJ2 306 aaKnown RBP20.2■□□□□ 0.82
CDX1-202ENST00000616154 ARRDC1-AS1Q9H2J1 176 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 POLR3BQ9NW08 1133 aaPredicted RBP20.2■□□□□ 0.82
CDX1-202ENST00000616154 TRPM5Q9NZQ8 1165 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 NME7Q9Y5B8 376 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 CLIC2O15247 247 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 NFATC1O95644 943 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 CST3P01034 146 aaPredicted RBP20.19■□□□□ 0.82
CDX1-202ENST00000616154 RPN1P04843 607 aaKnown RBP20.19■□□□□ 0.82
CDX1-202ENST00000616154 GNL1P36915 607 aaPredicted RBP20.19■□□□□ 0.82
CDX1-202ENST00000616154 LIMK1P53667 647 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 NOP14P78316 857 aaKnown RBP20.19■□□□□ 0.82
CDX1-202ENST00000616154 MDH1BQ5I0G3 518 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 PPM1JQ5JR12 505 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 KIAA1958Q8N8K9 716 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 RDH13Q8NBN7 331 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 C8orf48Q96LL4 319 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 CNTNAP3BQ96NU0 1288 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 FNBP1Q96RU3 617 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 CNTNAP3Q9BZ76 1288 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 SNX25Q9H3E2 840 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 GDPD2Q9HCC8 539 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 PCDHGA5Q9Y5G8 931 aa20.19■□□□□ 0.82
CDX1-202ENST00000616154 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.18■□□□□ 0.82
CDX1-202ENST00000616154 ZNF840PA6NDX5 716 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 PDXKO00764 312 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 ZNF202O95125 648 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 STAU1O95793 577 aaKnown RBP20.18■□□□□ 0.82
CDX1-202ENST00000616154 PRR29P0C7W0 189 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 ZNF806P0C7X5 589 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 PPP3CCP48454 512 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 CYP2J2P51589 502 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 CLDN10P78369 228 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 ZXDBP98169 803 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 CCDC26Q8TAB7 109 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 CCDC127Q96BQ5 260 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 LINC00597Q9H2U6 94 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 EBF1Q9UH73 591 aa20.18■□□□□ 0.82
CDX1-202ENST00000616154 CHD8Q9HCK8 2581 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 F8VP50 259 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 LEFTY2O00292 366 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 APBB3O95704 486 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 OLFM2O95897 454 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 TNNC1P63316 161 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 SLC7A9P82251 487 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 DMC1Q14565 340 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 SF3A2Q15428 464 aaKnown RBP20.17■□□□□ 0.82
CDX1-202ENST00000616154 NFIL3Q16649 462 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 WDR72Q3MJ13 1102 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 AASDHQ4L235 1098 aaPredicted RBP20.17■□□□□ 0.82
CDX1-202ENST00000616154 PLA2G2CQ5R387 149 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 C12orf50Q8NA57 414 aaPredicted RBP20.17■□□□□ 0.82
CDX1-202ENST00000616154 OR6B3Q8NGW1 331 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 DDX1Q92499 740 aaKnown RBP20.17■□□□□ 0.82
CDX1-202ENST00000616154 TRAF3IP3Q9Y228 551 aa20.17■□□□□ 0.82
CDX1-202ENST00000616154 KMT2BQ9UMN6 2715 aaPredicted RBP20.17■□□□□ 0.82
CDX1-202ENST00000616154 MYOFQ9NZM1 2061 aa20.16■□□□□ 0.82
CDX1-202ENST00000616154 PTPN1P18031 435 aaKnown RBP20.16■□□□□ 0.82
CDX1-202ENST00000616154 PLK5Q496M5 336 aa20.16■□□□□ 0.82
CDX1-202ENST00000616154 FMR1NBQ8N0W7 255 aaPredicted RBP20.16■□□□□ 0.82
CDX1-202ENST00000616154 ZNF516Q92618 1163 aa20.16■□□□□ 0.82
CDX1-202ENST00000616154 ELOVL4Q9GZR5 314 aa20.16■□□□□ 0.82
CDX1-202ENST00000616154 NUP205Q92621 2012 aa20.16■□□□□ 0.82
CDX1-202ENST00000616154 EXOC3O60645 756 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 KIF20AO95235 890 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 ATICP31939 592 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 OPRD1P41143 372 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 CACNA2D1P54289 1103 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 MYL6P60660 151 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 TRPC3Q13507 836 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 CCDC6Q16204 474 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 GAB4Q2WGN9 574 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 IL31Q6EBC2 164 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 ENGASEQ8NFI3 743 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 PLEKHO2Q8TD55 490 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 PARD3BQ8TEW8 1205 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 ZNF518BQ9C0D4 1074 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 RNF38Q9H0F5 515 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 XYLT2Q9H1B5 865 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 DUSP15Q9H1R2 295 aaPredicted RBP20.15■□□□□ 0.82
CDX1-202ENST00000616154 DPEP3Q9H4B8 488 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 TMEM30AQ9NV96 361 aa20.15■□□□□ 0.82
CDX1-202ENST00000616154 MAP1BP46821 2468 aaKnown RBP20.15■□□□□ 0.82
CDX1-202ENST00000616154 OAS1P00973 400 aaKnown RBP20.14■□□□□ 0.81
CDX1-202ENST00000616154 MPLP40238 635 aa20.14■□□□□ 0.81
CDX1-202ENST00000616154 AP3M2P53677 418 aa20.14■□□□□ 0.81
CDX1-202ENST00000616154 TAF10Q12962 218 aa20.14■□□□□ 0.81
CDX1-202ENST00000616154 TDRD10Q5VZ19 366 aaKnown RBP20.14■□□□□ 0.81
CDX1-202ENST00000616154 FILIP1Q7Z7B0 1213 aa20.14■□□□□ 0.81
CDX1-202ENST00000616154 GUF1Q8N442 669 aaKnown RBP20.14■□□□□ 0.81
CDX1-202ENST00000616154 B3GALNT2Q8NCR0 500 aa20.14■□□□□ 0.81
CDX1-202ENST00000616154 USP33Q8TEY7 942 aa20.14■□□□□ 0.81
CDX1-202ENST00000616154 CCDC47Q96A33 483 aaKnown RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms