RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 NEUROG2Q9H2A3 272 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 CHD4Q14839 1912 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 ZMYM2Q9UBW7 1377 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 BTNL10A8MVZ5 291 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 TRIM49D1C9J1S8 452 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 RARGP13631 454 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 ELF1P32519 619 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 PEX19P40855 299 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 PPIL2Q13356 520 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 BHMTQ93088 406 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 DDIT4Q9NX09 232 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 SMG5Q9UPR3 1016 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 NAALADL1Q9UQQ1 740 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 PAPPAQ13219 1627 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 CNTNAP2Q9UHC6 1331 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 ARHGEF37A1IGU5 675 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 NPM3O75607 178 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 LCA5LO95447 670 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 APOEP02649 317 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 HMGCRP04035 888 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 SPIRE1Q08AE8 756 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 CUL3Q13618 768 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 EFHC1Q5JVL4 640 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 CEP120Q8N960 986 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 OR6P1Q8NGX9 317 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 FAM129AQ9BZQ8 928 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 VCXQ9H320 206 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 DDX43Q9NXZ2 648 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 PECAM1P16284 738 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 CDC42EP1Q00587 391 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 IL1RL1Q01638 556 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 CES3Q6UWW8 571 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 ZNF662Q6ZS27 426 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 TAS2R42Q7RTR8 314 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 SLC2A14Q8TDB8 520 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 CELF6Q96J87 481 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 GBP5Q96PP8 586 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 TMEM134Q9H6X4 195 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 FAM8A1Q9UBU6 413 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 MROH7Q68CQ1 1323 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 CCT8L1PA6NM43 557 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 ERBB2P04626 1255 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 SMIM10L2AP0DMW4 78 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 SMIM10L2BP0DMW5 78 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 TGFB3P10600 412 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 TAC1P20366 129 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 EEF1DP3Q658K8 133 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 SLFN11Q7Z7L1 901 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 WDR75Q8IWA0 830 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 ALG3Q92685 438 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 LPPQ93052 612 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 WDCPQ9H6R7 721 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 SLC38A7Q9NVC3 462 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 PCDH10Q9P2E7 1040 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 WDR27A2RRH5 827 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 CXCL11O14625 94 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 PYGBP11216 843 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 ODC1P11926 461 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 MIPP30301 263 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 ATICP31939 592 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 AARSP49588 968 aaKnown RBP eCLIP9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 TKTL1P51854 596 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 DRP2Q13474 957 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 HSDL1Q3SXM5 330 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 CDC26Q8NHZ8 85 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 ACTL9Q8TC94 416 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 DTX3LQ8TDB6 740 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 BFARQ9NZS9 450 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 SSTR1P30872 391 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 VCPP55072 806 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 FCGRTP55899 365 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 CORO7P57737 925 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 FBXO41Q8TF61 875 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 MRPL45Q9BRJ2 306 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 ZNF518BQ9C0D4 1074 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 TASP1Q9H6P5 420 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 PFDN6O15212 129 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 DGKIO75912 1065 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 AMPD1P23109 780 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 TNFRSF8P28908 595 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 BST2Q10589 180 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 ERMARDQ5T6L9 678 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 FRA10AC1Q70Z53 315 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 RMDN1Q96DB5 314 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 CDT1Q9H211 546 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 KPNA7A9QM74 516 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 BGNP21810 368 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 SOX11P35716 441 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 PTK6Q13882 451 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 EFTUD2Q15029 972 aaKnown RBP eCLIP9.28□□□□□ -0.925e-8■□□□□ 11.1
PDLIM5-222ENST00000615540 FBXO47Q5MNV8 452 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 GPR142Q7Z601 462 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 SLC9A9Q8IVB4 645 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 PRELID2Q8N945 189 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 TTC8Q8TAM2 541 aa9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 AFF4Q9UHB7 1163 aaKnown RBP9.28□□□□□ -0.92
PDLIM5-222ENST00000615540 FANCGO15287 622 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 TRPA1O75762 1119 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 ZWINTO95229 277 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 RABGGTBP53611 331 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms