RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ARCQ7LC44 396 aa14.99□□□□□ -0.01
USP39-220ENST00000613444 YME1L1Q96TA2 773 aa14.99□□□□□ -0.01
USP39-220ENST00000613444 RNF14Q9UBS8 474 aa14.99□□□□□ -0.01
USP39-220ENST00000613444 PSMA2P25787 234 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 ZNF143P52747 638 aaPredicted RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 RNASE9P60153 205 aaKnown RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 CFAP221Q4G0U5 840 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 PSRC1Q6PGN9 363 aaPredicted RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 C4orf50Q6ZRC1 276 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 DCP1BQ8IZD4 617 aaKnown RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 UBL4BQ8N7F7 174 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 COLGALT1Q8NBJ5 622 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 ACTRT1Q8TDG2 376 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 HERVK_113Q902F9 699 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 NDRG1Q92597 394 aaKnown RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 ZNF558Q96NG5 402 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 DPYSL4O14531 572 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 LRCH4O75427 683 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 VNN2O95498 520 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 LAG3P18627 525 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 CYP2F1P24903 491 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 TKTL1P51854 596 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 AADACL2Q6P093 401 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 CC2D1AQ6P1N0 951 aaPredicted RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 ANKS3Q6ZW76 656 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 RSRC2Q7L4I2 434 aaKnown RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 SPATA2LQ8IUW3 424 aaPredicted RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 MNS1Q8NEH6 495 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 RXFP2Q8WXD0 754 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 FUBP3Q96I24 572 aaKnown RBP eCLIP14.98□□□□□ -0.01
USP39-220ENST00000613444 LRRC4Q9HBW1 653 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 PNPLA8Q9NP80 782 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 DMAP1Q9NPF5 467 aaPredicted RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 TTC7AQ9ULT0 858 aaPredicted RBP14.98□□□□□ -0.01
USP39-220ENST00000613444 USTQ9Y2C2 406 aa14.98□□□□□ -0.01
USP39-220ENST00000613444 PLXNA4Q9HCM2 1894 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 PSTPIP1O43586 416 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 CEP104O60308 925 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 PYGMP11217 842 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 GPD1P21695 349 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 MRPS5P82675 430 aaKnown RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 CKAP4Q07065 602 aaKnown RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 ZNF211Q13398 564 aaPredicted RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 NAA30Q147X3 362 aaPredicted RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 NFE2Q16621 373 aaPredicted RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 USP41Q3LFD5 358 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 CCDC14Q49A88 953 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 SPOUT1Q5T280 376 aaKnown RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 PRSS55Q6UWB4 352 aaPredicted RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 BHLHA9Q7RTU4 235 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 CNPY3Q9BT09 278 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 C11orf84Q9BUA3 381 aaPredicted RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 MTRRQ9UBK8 725 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 ZMYND8Q9ULU4 1186 aaPredicted RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 MYO16Q9Y6X6 1858 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 UQCRHLA0A096LP55 91 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 CTAGE15A4D2H0 777 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 EFCAB8A8MWE9 144 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 H7C4K7 107 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 TNFRSF10BO14763 440 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 SOD2P04179 222 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 UQCRHP07919 91 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 CTAGE8P0CG41 777 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 PDGFRAP16234 1089 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 SLC25A11Q02978 314 aaKnown RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 ITIH3Q06033 890 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 GPR17Q13304 367 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 ACAP1Q15027 740 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 RAB6CQ53S08 254 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 SH3PXD2AQ5TCZ1 1133 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 TXNRD3NBQ6F5E7 133 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 CTAGE6Q86UF2 777 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 CTAGE4Q8IX94 777 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 RHOT1Q8IXI2 618 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 PIK3R5Q8WYR1 880 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 RNPC3Q96LT9 517 aaKnown RBP14.97□□□□□ -0.01
USP39-220ENST00000613444 HTATIP2Q9BUP3 242 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 ADAM33Q9BZ11 813 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 ULBP1Q9BZM6 244 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 RAB6CQ9H0N0 254 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 CNGB3Q9NQW8 809 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 USP3Q9Y6I4 520 aa14.97□□□□□ -0.01
USP39-220ENST00000613444 PLXNA3P51805 1871 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 ADAM12O43184 909 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 RWDD2BP57060 319 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 DAOAP59103 153 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 C15orf59Q2T9L4 293 aaPredicted RBP14.96□□□□□ -0.01
USP39-220ENST00000613444 EFHC1Q5JVL4 640 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 LRRC38Q5VT99 294 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 SLC8B1Q6J4K2 584 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 TTC9BQ8N6N2 239 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 NOA1Q8NC60 698 aaKnown RBP14.96□□□□□ -0.01
USP39-220ENST00000613444 SPATA4Q8NEY3 305 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 CFAP57Q96MR6 1250 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 OXCT2Q9BYC2 517 aaPredicted RBP14.96□□□□□ -0.01
USP39-220ENST00000613444 ABI2Q9NYB9 513 aaPredicted RBP14.96□□□□□ -0.01
USP39-220ENST00000613444 SPG21Q9NZD8 308 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 BACE2Q9Y5Z0 518 aa14.96□□□□□ -0.01
USP39-220ENST00000613444 RANBP2P49792 3224 aaKnown RBP14.96□□□□□ -0.01
USP39-220ENST00000613444 CHD7Q9P2D1 2997 aa14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms