RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 RNF219Q5W0B1 726 aaPredicted RBP11.31□□□□□ -0.6
FAM3A-221ENST00000612856 CWF19L1Q69YN2 538 aaKnown RBP11.31□□□□□ -0.6
FAM3A-221ENST00000612856 SLC27A1Q6PCB7 646 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 MAB21L3Q8N8X9 362 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ITFG2Q969R8 447 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ALKBH8Q96BT7 664 aaKnown RBP11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ATXN7L3BQ96GX2 97 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 B3GALT6Q96L58 329 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 TXLNGQ9NUQ3 528 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 DDIT4Q9NX09 232 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 STRIP2Q9ULQ0 834 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 PCDHB2Q9Y5E7 798 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 NRCAMQ92823 1304 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 NVLO15381 856 aaKnown RBP11.31□□□□□ -0.6
FAM3A-221ENST00000612856 CD4P01730 458 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ATF2P15336 505 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 C6orf118Q5T5N4 469 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 OVOS1Q6IE37 1185 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ARHGEF18Q6ZSZ5 1173 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 SCUBE3Q8IX30 993 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 LRRC37BQ96QE4 947 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 TTC1Q99614 292 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 UNC93B1Q9H1C4 597 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 KCND2Q9NZV8 630 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ZNF536O15090 1300 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ADAMTSL1Q8N6G6 1762 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 TMEM120BA0PK00 339 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 FOXO6A8MYZ6 492 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 PIK3CDO00329 1044 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 BDNFP23560 247 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 KLRC2P26717 231 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 NDST1P52848 882 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 SLC12A2P55011 1212 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 CYP24A1Q07973 514 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 BLMHQ13867 455 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 TCEA2Q15560 299 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ARL13BQ3SXY8 428 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ACBD5Q5T8D3 534 aaPredicted RBP11.31□□□□□ -0.6
FAM3A-221ENST00000612856 AGBL2Q5U5Z8 902 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 MTHFD1LQ6UB35 978 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ADGRF2Q8IZF7 708 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 C12orf29Q8N999 325 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 LENG9Q96B70 501 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 TJP2Q9UDY2 1190 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 SRRDQ9UH36 339 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 PADI3Q9ULW8 664 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.31□□□□□ -0.6
FAM3A-221ENST00000612856 MYH8P13535 1937 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 MYH10P35580 1976 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ENTPD5O75356 428 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 SPAG7O75391 227 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 RTN3O95197 1032 aaPredicted RBP11.3□□□□□ -0.6
FAM3A-221ENST00000612856 ECEL1O95672 775 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 URODP06132 367 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 CYP3A4P08684 503 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 KCNMA1Q12791 1236 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 EFEMP1Q12805 493 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 CUL2Q13617 745 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 CCDC14Q49A88 953 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 DAB2IPQ5VWQ8 1189 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 WSCD1Q658N2 575 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 CRELD2Q6UXH1 353 aaPredicted RBP11.3□□□□□ -0.6
FAM3A-221ENST00000612856 TMCO2Q7Z6W1 182 aaPredicted RBP11.3□□□□□ -0.6
FAM3A-221ENST00000612856 KLHL23Q8NBE8 558 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 HIPK4Q8NE63 616 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 STK33Q9BYT3 514 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 CDT1Q9H211 546 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 NEUROG2Q9H2A3 272 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 UBN1Q9NPG3 1134 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 STAP1Q9ULZ2 295 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 ARL2BPQ9Y2Y0 163 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 NR2E3Q9Y5X4 410 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 TAF1LQ8IZX4 1826 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 UBR3Q6ZT12 1888 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 ADRB2P07550 413 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 FAM200BP0CF97 657 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 FGFR1P11362 822 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 PCSK1P29120 753 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 SULT1E1P49888 294 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 YWHAHQ04917 246 aaPredicted RBP11.3□□□□□ -0.6
FAM3A-221ENST00000612856 IKBKEQ14164 716 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 FAXCQ5TGI0 409 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 TLDC1Q6P9B6 456 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 ABHD15Q6UXT9 468 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 ARHGEF19Q8IW93 802 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 TMEM161BQ8NDZ6 487 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 SLC35G2Q8TBE7 412 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 FAM81AQ8TBF8 368 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 LRRN4Q8WUT4 740 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.3□□□□□ -0.64e-6■■□□□ 12.7
FAM3A-221ENST00000612856 THAP2Q9H0W7 228 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 STOML1Q9UBI4 398 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 DDX60LQ5H9U9 1706 aaKnown RBP11.3□□□□□ -0.6
FAM3A-221ENST00000612856 SEPT4O43236 478 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 RPL17P18621 184 aaKnown RBP11.3□□□□□ -0.6
FAM3A-221ENST00000612856 HOXA7P31268 230 aaPredicted RBP11.3□□□□□ -0.6
FAM3A-221ENST00000612856 NCALDP61601 193 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 CCDC157Q569K6 752 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 RSPH1Q8WYR4 309 aa11.3□□□□□ -0.6
FAM3A-221ENST00000612856 ERGIC2Q96RQ1 377 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms