RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ST3GAL5Q9UNP4 418 aa15.17■□□□□ 0.02
VRK3-217ENST00000599538 DRG1Q9Y295 367 aaKnown RBP15.17■□□□□ 0.02
VRK3-217ENST00000599538 SGK1O00141 431 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 RARBP10826 455 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 PCK1P35558 622 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 TM4SF4P48230 202 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 TAF6P49848 677 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 SEC24CP53992 1094 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 ATXN1P54253 815 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 PPP2R2AP63151 447 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 SLC6A3Q01959 620 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 PRKCZQ05513 592 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 SREBF2Q12772 1141 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 ACAP1Q15027 740 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 ZC3H12AQ5D1E8 599 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 ARHGAP17Q68EM7 881 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 TAF2Q6P1X5 1199 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 TRMT10CQ7L0Y3 403 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 LIMS2Q7Z4I7 341 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 RFX6Q8HWS3 928 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 CRYBG2Q8N1P7 616 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 MDM1Q8TC05 714 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 SLC2A14Q8TDB8 520 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 BCAS4Q8TDM0 211 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 MAGEB5Q9BZ81 275 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 NGRNQ9NPE2 291 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 MIOSQ9NXC5 875 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 NINJ2Q9NZG7 142 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 FOXO6A8MYZ6 492 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 DNALI1O14645 258 aaPredicted RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 ENDOD1O94919 500 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 TTC4O95801 387 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 ITGAVP06756 1048 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 ACAT1P24752 427 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 CDH6P55285 790 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 LMNB2Q03252 620 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 GAD2Q05329 585 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 AUHQ13825 339 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 CA9Q16790 459 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 HP1BP3Q5SSJ5 553 aaPredicted RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 SCYL2Q6P3W7 929 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 HOOK3Q86VS8 718 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 TAB3Q8N5C8 712 aaPredicted RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 APPL2Q8NEU8 664 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 NDRG1Q92597 394 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 PPP1R10Q96QC0 940 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 AGO3Q9H9G7 860 aaKnown RBP15.16■□□□□ 0.02
VRK3-217ENST00000599538 EFR3BQ9Y2G0 817 aa15.16■□□□□ 0.02
VRK3-217ENST00000599538 CLDN5O00501 218 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 LCP1P13796 627 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 MLH1P40692 756 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 CAV1Q03135 178 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 CACNB2Q08289 660 aaPredicted RBP15.15■□□□□ 0.02
VRK3-217ENST00000599538 CCDC38Q502W7 563 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 CYP4F22Q6NT55 531 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 UNC45BQ8IWX7 931 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 ADGRF2Q8IZF7 708 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 ANKRD52Q8NB46 1076 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 FAM172AQ8WUF8 416 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 PGM2Q96G03 612 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 ZNF560Q96MR9 790 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 SNX25Q9H3E2 840 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 CTNNAL1Q9UBT7 734 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 TRPV2Q9Y5S1 764 aa15.15■□□□□ 0.02
VRK3-217ENST00000599538 RASGRF2O14827 1237 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 IL4RP24394 825 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 CCND3P30281 292 aaPredicted RBP15.14■□□□□ 0.01
VRK3-217ENST00000599538 FCGRTP55899 365 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 DPYSL3Q14195 570 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 FASTKD3Q14CZ7 662 aaKnown RBP15.14■□□□□ 0.01
VRK3-217ENST00000599538 KIAA0319Q5VV43 1072 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 RBM15Q96T37 977 aaKnown RBP eCLIP15.14■□□□□ 0.013e-6■■■■□ 20.8
VRK3-217ENST00000599538 GAD1Q99259 594 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 TMEM109Q9BVC6 243 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 FAM105AQ9NUU6 356 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 RGS16O15492 202 aaPredicted RBP15.14■□□□□ 0.01
VRK3-217ENST00000599538 ADAMTS4O75173 837 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 BEST1O76090 585 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 SETSIPP0DME0 302 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 ELNP15502 786 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 RABGGTBP53611 331 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 HDAC4P56524 1084 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 BST2Q10589 180 aaKnown RBP15.14■□□□□ 0.01
VRK3-217ENST00000599538 PTGISQ16647 500 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 SV2CQ496J9 727 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 RNASEH2BQ5TBB1 312 aaKnown RBP15.14■□□□□ 0.01
VRK3-217ENST00000599538 MFSD14CQ5VZR4 134 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 WSCD1Q658N2 575 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 PAXIP1Q6ZW49 1069 aaPredicted RBP15.14■□□□□ 0.01
VRK3-217ENST00000599538 SERINC5Q86VE9 423 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 SENP6Q9GZR1 1112 aaPredicted RBP15.14■□□□□ 0.01
VRK3-217ENST00000599538 UPF3AQ9H1J1 476 aaKnown RBP15.14■□□□□ 0.01
VRK3-217ENST00000599538 RSPH14Q9UHP6 348 aa15.14■□□□□ 0.01
VRK3-217ENST00000599538 DPYSL4O14531 572 aa15.13■□□□□ 0.01
VRK3-217ENST00000599538 XPOTO43592 962 aaKnown RBP15.13■□□□□ 0.01
VRK3-217ENST00000599538 PRPSAP2O60256 369 aa15.13■□□□□ 0.01
VRK3-217ENST00000599538 HUS1O60921 280 aa15.13■□□□□ 0.01
VRK3-217ENST00000599538 BANF1O75531 89 aa15.13■□□□□ 0.01
VRK3-217ENST00000599538 MAP3K6O95382 1288 aa15.13■□□□□ 0.01
VRK3-217ENST00000599538 ASGR1P07306 291 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms