RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 TSPAN16Q9UKR8 245 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 CYP26A1O43174 497 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 NPR3P17342 541 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 CLCN1P35523 988 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 USP8P40818 1118 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 MAP3K7CLP57077 242 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 CNGA2Q16280 664 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 GOLGA7BQ2TAP0 167 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 PRSS36Q5K4E3 855 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 LCLAT1Q6UWP7 414 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 TTC30AQ86WT1 665 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 ANKRD52Q8NB46 1076 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 STKLD1Q8NE28 680 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 TRMT2BQ96GJ1 504 aaKnown RBP19.23■□□□□ 0.67
LIG1-216ENST00000598938 XPO4Q9C0E2 1151 aaKnown RBP19.23■□□□□ 0.67
LIG1-216ENST00000598938 ZNF334Q9HCZ1 680 aaPredicted RBP19.23■□□□□ 0.67
LIG1-216ENST00000598938 NLRC4Q9NPP4 1024 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 ASAH2Q9NR71 780 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.23■□□□□ 0.67
LIG1-216ENST00000598938 GVINP1Q7Z2Y8 2422 aa19.23■□□□□ 0.67
LIG1-216ENST00000598938 NOTCH4Q99466 2003 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 HHLA1C9JL84 531 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 TNFRSF10BO14763 440 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 CBFA2T2O43439 604 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 GNA15P30679 374 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 SLC5A9Q2M3M2 681 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 PKDCCQ504Y2 493 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 SARM1Q6SZW1 724 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 DENND5BQ6ZUT9 1274 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 PDZD4Q76G19 769 aaPredicted RBP19.22■□□□□ 0.67
LIG1-216ENST00000598938 MYRFLQ96LU7 910 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 TTLL2Q9BWV7 592 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 TTYH3Q9C0H2 523 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 PNPLA8Q9NP80 782 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 ACP6Q9NPH0 428 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 HESX1Q9UBX0 185 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 VPS13AQ96RL7 3174 aa19.22■□□□□ 0.67
LIG1-216ENST00000598938 CACNA1AO00555 2505 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 PATJQ8NI35 1801 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 MICAL2O94851 1124 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 TPM3P06753 285 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 FSHRP23945 695 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 CCR2P41597 374 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 BCAT1P54687 386 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 PTK2Q05397 1052 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 BST2Q10589 180 aaKnown RBP19.21■□□□□ 0.67
LIG1-216ENST00000598938 TAF12Q16514 161 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 MEA1Q16626 185 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 FIGNQ5HY92 759 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 CYP4A22Q5TCH4 519 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 NUP93Q8N1F7 819 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 ITFG1Q8TB96 612 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 ZNF606Q8WXB4 792 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 NKD2Q969F2 451 aaPredicted RBP19.21■□□□□ 0.67
LIG1-216ENST00000598938 SPAG5Q96R06 1193 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 UBXN6Q9BZV1 441 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 MFSD1Q9H3U5 465 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 IL21Q9HBE4 155 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 IL37Q9NZH6 218 aa19.21■□□□□ 0.67
LIG1-216ENST00000598938 NRG2O14511 850 aaPredicted RBP19.2■□□□□ 0.66
LIG1-216ENST00000598938 ZNF197O14709 1029 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 AP5Z1O43299 807 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 THAP12O43422 761 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 MED7O43513 233 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 MOSPD3O75425 235 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 FGF19O95750 216 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 SETSIPP0DME0 302 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 MYL4P12829 197 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 SOX5P35711 763 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 SLC5A3P53794 718 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 BPIFB4P59827 614 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 USP46P62068 366 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 GAREM2Q75VX8 874 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 CACNA2D4Q7Z3S7 1137 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 SLC47A2Q86VL8 602 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 BAP1Q92560 729 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 TCEAL4Q96EI5 215 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 COMMD8Q9NX08 183 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 EHD2Q9NZN4 543 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 UXTQ9UBK9 157 aaPredicted RBP19.2■□□□□ 0.66
LIG1-216ENST00000598938 MYO6Q9UM54 1294 aa19.2■□□□□ 0.66
LIG1-216ENST00000598938 MAGED2Q9UNF1 606 aaPredicted RBP19.2■□□□□ 0.66
LIG1-216ENST00000598938 MRPS23Q9Y3D9 190 aaKnown RBP19.2■□□□□ 0.66
LIG1-216ENST00000598938 GREB1Q4ZG55 1949 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 M0QYV0 167 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 XPO1O14980 1071 aaKnown RBP19.19■□□□□ 0.66
LIG1-216ENST00000598938 GFPT2O94808 682 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 RTN3O95197 1032 aaPredicted RBP19.19■□□□□ 0.66
LIG1-216ENST00000598938 F11P03951 625 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 CEBPBP17676 345 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 GABRR2P28476 465 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 STAT1P42224 750 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 SLC8A3P57103 927 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 PDE4CQ08493 712 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 GET4Q7L5D6 327 aaPredicted RBP19.19■□□□□ 0.66
LIG1-216ENST00000598938 GPRIN1Q7Z2K8 1008 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 TMEM150AQ86TG1 271 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 SHKBP1Q8TBC3 707 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 UBA3Q8TBC4 463 aa19.19■□□□□ 0.66
LIG1-216ENST00000598938 EDEM3Q9BZQ6 932 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms