RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PCDH15Q96QU1 1955 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 PLXND1Q9Y4D7 1925 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 ANKRD63C9JTQ0 380 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 ZBTB24O43167 697 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-210ENST00000597618 TBCAO75347 108 aaKnown RBP10.84□□□□□ -0.67
TRIM28-210ENST00000597618 ZNF217O75362 1048 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 GJB3O75712 270 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 ADH5P11766 374 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 PPP3CCP48454 512 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 CCDC142Q17RM4 750 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 PREPLQ4J6C6 727 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-210ENST00000597618 EMC10Q5UCC4 262 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 VSTM1Q6UX27 236 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 DENND5BQ6ZUT9 1274 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 C12orf40Q86WS4 652 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 DDX42Q86XP3 938 aaKnown RBP eCLIP10.84□□□□□ -0.67
TRIM28-210ENST00000597618 ADGRF2Q8IZF7 708 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 DEFB119Q8N690 84 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 TOP6BLQ8N6T0 577 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 GLIS3Q8NEA6 775 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 MDM1Q8TC05 714 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 HNRNPLLQ8WVV9 542 aaKnown RBP10.84□□□□□ -0.67
TRIM28-210ENST00000597618 CAMK1GQ96NX5 476 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 BBC3Q96PG8 261 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-210ENST00000597618 ZHX3Q9H4I2 956 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 FAM124BQ9H5Z6 455 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-210ENST00000597618 SUSD2Q9UGT4 822 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 AGAP1Q9UPQ3 857 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 RAXQ9Y2V3 346 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 CPQQ9Y646 472 aa10.84□□□□□ -0.67
TRIM28-210ENST00000597618 IGHV1OR15-9A0A0B4J2B8 117 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 VWA3AA6NCI4 1184 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 TBC1D3BA6NDS4 549 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 ZNF840PA6NDX5 716 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 TISP43B9A030 160 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 SLC26A4O43511 780 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 OLFM2O95897 454 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 ITGB3P05106 788 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 KRT18P05783 430 aaKnown RBP10.83□□□□□ -0.68
TRIM28-210ENST00000597618 HOXB2P14652 356 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 GNSP15586 552 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 GABRG2P18507 467 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 ANXA13P27216 316 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 TFAMQ00059 246 aaKnown RBP10.83□□□□□ -0.68
TRIM28-210ENST00000597618 MAPRE1Q15691 268 aaKnown RBP10.83□□□□□ -0.68
TRIM28-210ENST00000597618 PLEKHG6Q3KR16 790 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 SYCP2LQ5T4T6 812 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 FAM171BQ6P995 826 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 RHBDF2Q6PJF5 856 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 CRELD2Q6UXH1 353 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-210ENST00000597618 NUDT18Q6ZVK8 323 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 GLRX5Q86SX6 157 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 OSTM1Q86WC4 334 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 SLC41A1Q8IVJ1 513 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 ZNF513Q8N8E2 541 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-210ENST00000597618 PNPLA1Q8N8W4 532 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 C1orf127Q8N9H9 656 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 TRIML1Q8N9V2 468 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 CACTINQ8WUQ7 758 aaKnown RBP10.83□□□□□ -0.68
TRIM28-210ENST00000597618 POMGNT1Q8WZA1 660 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 LRIG1Q96JA1 1093 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 HSPA12BQ96MM6 686 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 FIZ1Q96SL8 496 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 TTLL2Q9BWV7 592 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 ZDHHC5Q9C0B5 715 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 ST6GALNAC4Q9H4F1 302 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 ZDHHC4Q9NPG8 344 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 SMPD4Q9NXE4 827 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 GDAP2Q9NXN4 497 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 CFAP97Q9P2B7 532 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 TBC1D14Q9P2M4 693 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 MAGEC2Q9UBF1 373 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-210ENST00000597618 DKK4Q9UBT3 224 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 ITGA11Q9UKX5 1188 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 LIMCH1Q9UPQ0 1083 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 SNX9Q9Y5X1 595 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 TCHHQ07283 1943 aa10.83□□□□□ -0.68
TRIM28-210ENST00000597618 HELZP42694 1942 aaKnown RBP10.82□□□□□ -0.68
TRIM28-210ENST00000597618 GABRDO14764 452 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 SCAMP3O14828 347 aaKnown RBP10.82□□□□□ -0.68
TRIM28-210ENST00000597618 TRIM66O15016 1216 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 GRIK1P39086 918 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 USP46P62068 366 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 GAD2Q05329 585 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 DHX8Q14562 1220 aaKnown RBP10.82□□□□□ -0.68
TRIM28-210ENST00000597618 POSTNQ15063 836 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 RILPL1Q5EBL4 403 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 LY6G5CQ5SRR4 150 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 BTBD8Q5XKL5 378 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 TOGARAM2Q6ZUX3 1019 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 RGL4Q8IZJ4 473 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 PHTF2Q8N3S3 785 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 SPRYD3Q8NCJ5 442 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 FOXJ1Q92949 421 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 MYLPFQ96A32 169 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 HVCN1Q96D96 273 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 OTUB2Q96DC9 234 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 CALML4Q96GE6 196 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 SYT15Q9BQS2 421 aa10.82□□□□□ -0.68
TRIM28-210ENST00000597618 RNF38Q9H0F5 515 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms