RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 NXPE3Q969Y0 559 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 TRMT2BQ96GJ1 504 aaKnown RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 ASB16Q96NS5 453 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 CYP2S1Q96SQ9 504 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 LSM14BQ9BX40 385 aaKnown RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 SLC46A2Q9BY10 475 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 ANAPC1Q9H1A4 1944 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 EHD2Q9NZN4 543 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 TRPM5Q9NZQ8 1165 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 HESX1Q9UBX0 185 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 CHORDC1Q9UHD1 332 aaPredicted RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 DNAJC12Q9UKB3 198 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 FBXL21Q9UKT6 434 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 TECTAO75443 2155 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 GTPBP10A4D1E9 387 aaKnown RBP11.72□□□□□ -0.53
LIG1-211ENST00000596457 TADA3O75528 432 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 BRD2P25440 801 aaKnown RBP11.72□□□□□ -0.53
LIG1-211ENST00000596457 AVPR1AP37288 418 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 SLC5A3P53794 718 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 KCNMA1Q12791 1236 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 NCAPHQ15003 741 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 FKBP15Q5T1M5 1219 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 ARHGAP17Q68EM7 881 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 GPRIN1Q7Z2K8 1008 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 DHX40Q8IX18 779 aaKnown RBP11.72□□□□□ -0.53
LIG1-211ENST00000596457 YAF2Q8IY57 180 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 FBXL6Q8N531 539 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 MYRFLQ96LU7 910 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 SLITRK1Q96PX8 696 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 FUCA2Q9BTY2 467 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 DUSP16Q9BY84 665 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 IRF2BPLQ9H1B7 796 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 FAM124BQ9H5Z6 455 aaPredicted RBP11.72□□□□□ -0.53
LIG1-211ENST00000596457 SIX2Q9NPC8 291 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 APEX2Q9UBZ4 518 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 AJAP1Q9UKB5 411 aaPredicted RBP11.72□□□□□ -0.53
LIG1-211ENST00000596457 TSPAN16Q9UKR8 245 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 PATJQ8NI35 1801 aa11.72□□□□□ -0.53
LIG1-211ENST00000596457 BAHCC1Q9P281 2608 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 C2orf78A6NCI8 922 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 HEPACAM2A8MVW5 462 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 ECI2O75521 394 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 PAEPP09466 180 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 ATP1A3P13637 1013 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 NPR3P17342 541 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 FCARP24071 287 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 KLK7P49862 253 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 SLC8A3P57103 927 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 GPC5P78333 572 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 UBXN1Q04323 297 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 RAPGEF1Q13905 1077 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 VITQ6UXI7 678 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 ENOSF1Q7L5Y1 443 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 CMTM8Q8IZV2 173 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 ARL14EPQ8N8R7 260 aaPredicted RBP11.71□□□□□ -0.53
LIG1-211ENST00000596457 TFAP2BQ92481 460 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 ELSPBP1Q96BH3 223 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 FAM81BQ96LP2 452 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 CEP295NLQ96MC4 621 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 BPIFA3Q9BQP9 254 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 TTLL2Q9BWV7 592 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 CBX8Q9HC52 389 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 CSNK1G1Q9HCP0 422 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 GMIPQ9P107 970 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 LIMA1Q9UHB6 759 aaKnown RBP11.71□□□□□ -0.53
LIG1-211ENST00000596457 KIAA1257Q9ULG3 409 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 CA14Q9ULX7 337 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 DUSP12Q9UNI6 340 aa11.71□□□□□ -0.53
LIG1-211ENST00000596457 TRAV19A0A0A6YYK7 116 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 HHLA1C9JL84 531 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 M0QYV0 167 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 PIK3R2O00459 728 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 STK25O00506 426 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 TNFRSF10BO14763 440 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 THAP12O43422 761 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 PRAMEF12O95522 483 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 CKMP06732 381 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 USP17L7P0C7H9 530 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 PNMA6AP0CW24 399 aaPredicted RBP11.7□□□□□ -0.54
LIG1-211ENST00000596457 HDCP19113 662 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 DDX6P26196 483 aaKnown RBP eCLIP11.7□□□□□ -0.54
LIG1-211ENST00000596457 GDI1P31150 447 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 TPM4P67936 248 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 PDE4CQ08493 712 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 KLHDC7AQ5VTJ3 777 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 LUZP1Q86V48 1076 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 MON1AQ86VX9 555 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 TTC30AQ86WT1 665 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 ANKRD52Q8NB46 1076 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 TTC8Q8TAM2 541 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 RSPRY1Q96DX4 576 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 ASIC4Q96FT7 647 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 SLC22A12Q96S37 553 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 TRMT61BQ9BVS5 477 aaKnown RBP11.7□□□□□ -0.54
LIG1-211ENST00000596457 FBXO44Q9H4M3 255 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 BRD9Q9H8M2 597 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 ACP6Q9NPH0 428 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 FHOD1Q9Y613 1164 aa11.7□□□□□ -0.54
LIG1-211ENST00000596457 HELZP42694 1942 aaKnown RBP11.7□□□□□ -0.54
LIG1-211ENST00000596457 ZNF318Q5VUA4 2279 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms