RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FAM92AA1XBS5 289 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 RNF225M0QZC1 329 aaPredicted RBP15.88■□□□□ 0.13
UPF1-202ENST00000594243 TADA3O75528 432 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 ABL1P00519 1130 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 CFHP08603 1231 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 USP17L7P0C7H9 530 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 KRT31Q15323 416 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 VITQ6UXI7 678 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 YAF2Q8IY57 180 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 AOPEPQ8N6M6 819 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 RBBP8NLQ8NC74 664 aaPredicted RBP15.88■□□□□ 0.13
UPF1-202ENST00000594243 SCAMP5Q8TAC9 235 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 IRF7Q92985 503 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 FBXO32Q969P5 355 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 PBXIP1Q96AQ6 731 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 VPS16Q9H269 839 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 KIF9Q9HAQ2 790 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 C11orf16Q9NQ32 467 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 TDP1Q9NUW8 608 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 TAB2Q9NYJ8 693 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 CHORDC1Q9UHD1 332 aaPredicted RBP15.88■□□□□ 0.13
UPF1-202ENST00000594243 TSPAN16Q9UKR8 245 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 CNTN6Q9UQ52 1028 aa15.88■□□□□ 0.13
UPF1-202ENST00000594243 ZNF840PA6NDX5 716 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 FAM86C2PA6NEL3 165 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 LRRC10BA6NIK2 292 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 HHLA1C9JL84 531 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 ZNF263O14978 683 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 KRT5P13647 590 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 HDCP19113 662 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 ZNF165P49910 485 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 BCAT1P54687 386 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 KCNMA1Q12791 1236 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 GRM2Q14416 872 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 ZNF268Q14587 947 aaPredicted RBP15.87■□□□□ 0.13
UPF1-202ENST00000594243 NCAPHQ15003 741 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 CNGA2Q16280 664 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 GOLGA7BQ2TAP0 167 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 FKBP15Q5T1M5 1219 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 SNX30Q5VWJ9 437 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 GPIHBP1Q8IV16 184 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 BPIFB1Q8TDL5 484 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 CYP2S1Q96SQ9 504 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 FUCA2Q9BTY2 467 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 BRD9Q9H8M2 597 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 THG1LQ9NWX6 298 aaKnown RBP15.87■□□□□ 0.13
UPF1-202ENST00000594243 LIMA1Q9UHB6 759 aaKnown RBP15.87■□□□□ 0.13
UPF1-202ENST00000594243 DNAJC12Q9UKB3 198 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 NCANO14594 1321 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 DOCK8Q8NF50 2099 aa15.87■□□□□ 0.13
UPF1-202ENST00000594243 C2orf78A6NCI8 922 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 BECN2A8MW95 431 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 O00370 1275 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 CHADO15335 359 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 CKMP06732 381 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 GDI1P31150 447 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 ZNF132P52740 706 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 FCHO2Q0JRZ9 810 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 BST2Q10589 180 aaKnown RBP15.86■□□□□ 0.13
UPF1-202ENST00000594243 ARHGAP44Q17R89 818 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 GJB7Q6PEY0 223 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 LCLAT1Q6UWP7 414 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 ARL14EPQ8N8R7 260 aaPredicted RBP15.86■□□□□ 0.13
UPF1-202ENST00000594243 USP13Q92995 863 aaPredicted RBP15.86■□□□□ 0.13
UPF1-202ENST00000594243 LRFN3Q9BTN0 628 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 MFSD1Q9H3U5 465 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 SIX2Q9NPC8 291 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 TRPV5Q9NQA5 729 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 TLR8Q9NR97 1041 aaKnown RBP15.86■□□□□ 0.13
UPF1-202ENST00000594243 SCML2Q9UQR0 700 aa15.86■□□□□ 0.13
UPF1-202ENST00000594243 XPO1O14980 1071 aaKnown RBP15.85■□□□□ 0.13
UPF1-202ENST00000594243 MED7O43513 233 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 PRAMEF12O95522 483 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 CAVIN2O95810 425 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 SETSIPP0DME0 302 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 ZNF18P17022 549 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 RFX1P22670 979 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 USP8P40818 1118 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 KIF11P52732 1056 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 COPB1P53618 953 aaKnown RBP15.85■□□□□ 0.13
UPF1-202ENST00000594243 APBA1Q02410 837 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 PDE4CQ08493 712 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 ARHGAP29Q52LW3 1261 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 SLC44A4Q53GD3 710 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 HECTD3Q5T447 861 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 KLHDC7AQ5VTJ3 777 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 PIGZQ86VD9 579 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 TTC30AQ86WT1 665 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 DHX40Q8IX18 779 aaKnown RBP15.85■□□□□ 0.13
UPF1-202ENST00000594243 SIX5Q8N196 739 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 TFAP2BQ92481 460 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 DNASE1L2Q92874 299 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 RSPRY1Q96DX4 576 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 SHDQ96IW2 340 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 SMG9Q9H0W8 520 aaKnown RBP15.85■□□□□ 0.13
UPF1-202ENST00000594243 CA14Q9ULX7 337 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.85■□□□□ 0.13
UPF1-202ENST00000594243 USP3Q9Y6I4 520 aa15.85■□□□□ 0.13
UPF1-202ENST00000594243 OAS1P00973 400 aaKnown RBP15.84■□□□□ 0.13
UPF1-202ENST00000594243 ZDHHC11BP0C7U3 371 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms