RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 PAX3P23760 479 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 STAT1P42224 750 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ASPAP45381 313 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 RAP1GAPP47736 663 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ALDH7A1P49419 539 aaKnown RBP5.66□□□□□ -1.5
LIG3-210ENST00000588109 FXR1P51114 621 aaKnown RBP eCLIP5.66□□□□□ -1.5
LIG3-210ENST00000588109 BCAR1P56945 870 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 LILRA4P59901 499 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ZBED6P86452 979 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 GCNT1Q02742 428 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ARID5AQ03989 594 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 DSC1Q08554 894 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 GOLGA8FQ08AF8 430 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 GOLGA8DPQ0D2H9 430 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 C19orf57Q0VDD7 668 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 TBX2Q13207 712 aaPredicted RBP5.66□□□□□ -1.5
LIG3-210ENST00000588109 DRAP1Q14919 205 aaPredicted RBP5.66□□□□□ -1.5
LIG3-210ENST00000588109 SUZ12Q15022 739 aaKnown RBP5.66□□□□□ -1.5
LIG3-210ENST00000588109 NAB2Q15742 525 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ASIC2Q16515 512 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 UPP1Q16831 310 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 SFMBT2Q5VUG0 894 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 SCARA3Q6AZY7 606 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 PDXDC1Q6P996 788 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 CCDC186Q7Z3E2 898 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 METTL23Q86XA0 190 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 CCNJLQ8IV13 435 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 FMNL3Q8IVF7 1028 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 HERC6Q8IVU3 1022 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 COLGALT2Q8IYK4 626 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 CMTR2Q8IYT2 770 aaKnown RBP5.66□□□□□ -1.5
LIG3-210ENST00000588109 FIBCD1Q8N539 461 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 TTC39CQ8N584 583 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 APPL2Q8NEU8 664 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 CXorf38Q8TB03 319 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 PHOSPHO2Q8TCD6 241 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 HASPINQ8TF76 798 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 KAT5Q92993 513 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 JAKMIP2Q96AA8 810 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 TRIM44Q96DX7 344 aaPredicted RBP5.66□□□□□ -1.5
LIG3-210ENST00000588109 PDLIM2Q96JY6 352 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 PPP1R9BQ96SB3 815 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 PAAF1Q9BRP4 392 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 TMEM175Q9BSA9 504 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 STK33Q9BYT3 514 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 TTYH3Q9C0H2 523 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 DNAI2Q9GZS0 605 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 XYLT2Q9H1B5 865 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 SNX25Q9H3E2 840 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 SMYD3Q9H7B4 428 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 NRDE2Q9H7Z3 1164 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 CYP3A43Q9HB55 503 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ZFYVE1Q9HBF4 777 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ABHD10Q9NUJ1 306 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 DNAJB4Q9UDY4 337 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 FBXL5Q9UKA1 691 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 AJAP1Q9UKB5 411 aaPredicted RBP5.66□□□□□ -1.5
LIG3-210ENST00000588109 SOX13Q9UN79 622 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 FAN1Q9Y2M0 1017 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 INSL6Q9Y581 213 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 PCDHB4Q9Y5E5 795 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 FNDC1Q4ZHG4 1894 aaPredicted RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 NT5C1B-RDH14C9J2C7 533 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 H0YGN5 161 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 TMEM189-UBE2V1I3L0A0 370 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 I3L4J1 428 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 CYB561D2O14569 222 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 NRP1O14786 923 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 B4GALT3O60512 393 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 GFPT2O94808 682 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 GALTP07902 379 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 PNMA6AP0CW24 399 aaPredicted RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 ODC1P11926 461 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 FERP16591 822 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 LAG3P18627 525 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 SOX5P35711 763 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 PBX3P40426 434 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 BRCC3P46736 316 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 SLC11A1P49279 550 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 PDE6CP51160 858 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 CDH8P55286 799 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 JAM2P57087 298 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 SHHQ15465 462 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 TIGD5Q53EQ6 642 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 ZNF394Q53GI3 561 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 TDRD12Q587J7 1177 aaKnown RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 C9orf50Q5SZB4 431 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 ALG1LQ6GMV1 187 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 DPY19L2P1Q6NXN4 242 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 TMEM270Q6UE05 265 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 KCNT2Q6UVM3 1135 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 DPH6Q7L8W6 267 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 ADGRF2Q8IZF7 708 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 TOP6BLQ8N6T0 577 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 TC2NQ8N9U0 490 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 RBBP8NLQ8NC74 664 aaPredicted RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 C3orf58Q8NDZ4 430 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 OR8K1Q8NGG5 319 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 OR6B3Q8NGW1 331 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 EPS8L3Q8TE67 593 aaKnown RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms