RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SH3RF2Q8TEC5 729 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 ATP2A3Q93084 1043 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 LINC00597Q9H2U6 94 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 VRTNQ9H8Y1 702 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 SLC8A2Q9UPR5 921 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 ATP6V1DQ9Y5K8 247 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 CACNA1AO00555 2505 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 A0A1W2PQ27 194 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 A0A1W2PQ64 194 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 A0A1W2PQD8 194 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 RNF40O75150 1001 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 RHOBTB3O94955 611 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 USP4Q13107 963 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 CEP68Q76N32 757 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 SEMA4GQ9NTN9 838 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 TRAF3IP3Q9Y228 551 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 WNT6Q9Y6F9 365 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 GREB1Q4ZG55 1949 aa21.78■■□□□ 1.08
SHMT1-209ENST00000582653 ZNF840PA6NDX5 716 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 CALUO43852 315 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-209ENST00000582653 ZNF202O95125 648 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 ZXDBP98169 803 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 IFRD2Q12894 506 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-209ENST00000582653 CSRP2Q16527 193 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 C1orf220Q5T0J3 134 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 NAIF1Q69YI7 327 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-209ENST00000582653 SV2AQ7L0J3 742 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 FAM160A2Q8N612 972 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-209ENST00000582653 KIAA1958Q8N8K9 716 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 TMC2Q8TDI7 906 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 CD101Q93033 1021 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 CCDC47Q96A33 483 aaKnown RBP21.77■■□□□ 1.08
SHMT1-209ENST00000582653 KCNK16Q96T55 309 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 RTKNQ9BST9 563 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 ELOVL4Q9GZR5 314 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 RNF38Q9H0F5 515 aa21.77■■□□□ 1.08
SHMT1-209ENST00000582653 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.77■■□□□ 1.08
SHMT1-209ENST00000582653 CDV3Q9UKY7 258 aaKnown RBP21.77■■□□□ 1.08
SHMT1-209ENST00000582653 PTPRDP23468 1912 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 ABL1P00519 1130 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 SLC7A9P82251 487 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 TAF10Q12962 218 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 ORC1Q13415 861 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 SGSM1Q2NKQ1 1148 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 ZACNQ401N2 412 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 SPOPLQ6IQ16 392 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 PAQR9Q6ZVX9 377 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-209ENST00000582653 ADGRG2Q8IZP9 1017 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 GAB3Q8WWW8 586 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 FRMD4BQ9Y2L6 1034 aa21.76■■□□□ 1.07
SHMT1-209ENST00000582653 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.76■■□□□ 1.07
SHMT1-209ENST00000582653 CEP250Q9BV73 2442 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 ANAPC1Q9H1A4 1944 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 LEFTY2O00292 366 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 FOXD2O60548 495 aaPredicted RBP21.75■■□□□ 1.07
SHMT1-209ENST00000582653 AKAP3O75969 853 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 PXNP49023 591 aaPredicted RBP21.75■■□□□ 1.07
SHMT1-209ENST00000582653 VAMP7P51809 220 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 SYT13Q7L8C5 426 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 ACOT1Q86TX2 421 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 EZH1Q92800 747 aaPredicted RBP21.75■■□□□ 1.07
SHMT1-209ENST00000582653 LOXL4Q96JB6 756 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 MED10Q9BTT4 135 aa21.75■■□□□ 1.07
SHMT1-209ENST00000582653 IKBKBO14920 756 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 RPP40O75818 363 aaKnown RBP21.74■■□□□ 1.07
SHMT1-209ENST00000582653 KIF20AO95235 890 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 NFATC1O95644 943 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 OLFM2O95897 454 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 NR2F2P24468 414 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 CACNA2D4Q7Z3S7 1137 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 NUP93Q8N1F7 819 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 CCDC26Q8TAB7 109 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 SLITRK1Q96PX8 696 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 HMGXB4Q9UGU5 601 aa21.74■■□□□ 1.07
SHMT1-209ENST00000582653 HLA-DRAP01903 254 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 TRIM49P0CI25 452 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 TRIM49CP0CI26 452 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 PRR23CQ6ZRP0 262 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 FAM35AQ86V20 835 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 SMYD4Q8IYR2 804 aaPredicted RBP21.73■■□□□ 1.07
SHMT1-209ENST00000582653 GUF1Q8N442 669 aaKnown RBP21.73■■□□□ 1.07
SHMT1-209ENST00000582653 RPLP0P6Q8NHW5 317 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 NETO1Q8TDF5 533 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 TNIP3Q96KP6 325 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 POLR3BQ9NW08 1133 aaPredicted RBP21.73■■□□□ 1.07
SHMT1-209ENST00000582653 SMPD4Q9NXE4 827 aa21.73■■□□□ 1.07
SHMT1-209ENST00000582653 DCDC2BA2VCK2 349 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 SCAMP3O14828 347 aaKnown RBP21.72■■□□□ 1.07
SHMT1-209ENST00000582653 AXIN1O15169 862 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 RTN3O95197 1032 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-209ENST00000582653 ASS1P00966 412 aaKnown RBP21.72■■□□□ 1.07
SHMT1-209ENST00000582653 OAS1P00973 400 aaKnown RBP21.72■■□□□ 1.07
SHMT1-209ENST00000582653 CCDC130P13994 396 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 YWHAQP27348 245 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 PIK3CAP42336 1068 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 GCLMP48507 274 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 NDST1P52848 882 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 PPP3CAQ08209 521 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 NFIL3Q16649 462 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms